T-BAs version 2.1: Tree-based alignment selector toolkit for evolutionary placement of DNA sequences and viewing alignments and specimen metadata on curated and custom trees

Ignazio Carbone; James B. White; Jolanta Miadlikowska; A. Elizabeth Arnold; Mark A. Miller; Nicolas Magain; Jana M. U'Ren; François Lutzoni

doi:10.1128/MRA.00328-19

T-BAs version 2.1: Tree-based alignment selector toolkit for evolutionary placement of DNA sequences and viewing alignments and specimen metadata on curated and custom trees

Ignazio Carbone
, James B. White
, Jolanta Miadlikowska
, A. Elizabeth Arnold
, Mark A. Miller
, Nicolas Magain
, Jana M. U'Ren
, François Lutzoni

Research output: Contribution to journal › Article › peer-review

53 Scopus citations

Abstract

The Tree-Based Alignment Selector (T-BAS) toolkit combines phylogenetic-based placement of DNA sequences with alignment and specimen metadata visualization tools in an integrative pipeline for analyzing microbial biodiversity. The release of T-BAS version 2.1 makes available reference phylogenies, supports multilocus sequence placements and permits uploading and downloading trees, alignments, and specimen metadata.

Original language	English (US)
Article number	e00328-19
Journal	Microbiology Resource Announcements
Volume	8
Issue number	29
DOIs	https://doi.org/10.1128/MRA.00328-19
State	Published - Jul 18 2019

ASJC Scopus subject areas

Molecular Biology
Immunology and Microbiology (miscellaneous)
Genetics

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10.1128/MRA.00328-19

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Carbone, I., White, J. B., Miadlikowska, J., Elizabeth Arnold, A., Miller, M. A., Magain, N., U'Ren, J. M., & Lutzoni, F. (2019). T-BAs version 2.1: Tree-based alignment selector toolkit for evolutionary placement of DNA sequences and viewing alignments and specimen metadata on curated and custom trees. Microbiology Resource Announcements, 8(29), Article e00328-19. https://doi.org/10.1128/MRA.00328-19

T-BAs version 2.1: Tree-based alignment selector toolkit for evolutionary placement of DNA sequences and viewing alignments and specimen metadata on curated and custom trees. / Carbone, Ignazio; White, James B.; Miadlikowska, Jolanta et al.
In: Microbiology Resource Announcements, Vol. 8, No. 29, e00328-19, 18.07.2019.

Research output: Contribution to journal › Article › peer-review

Carbone, I, White, JB, Miadlikowska, J, Elizabeth Arnold, A, Miller, MA, Magain, N, U'Ren, JM & Lutzoni, F 2019, 'T-BAs version 2.1: Tree-based alignment selector toolkit for evolutionary placement of DNA sequences and viewing alignments and specimen metadata on curated and custom trees', Microbiology Resource Announcements, vol. 8, no. 29, e00328-19. https://doi.org/10.1128/MRA.00328-19

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T-BAs version 2.1: Tree-based alignment selector toolkit for evolutionary placement of DNA sequences and viewing alignments and specimen metadata on curated and custom trees

Abstract

ASJC Scopus subject areas

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