TY - JOUR
T1 - Statistical methods for assays with limits of detection
T2 - Serum bile acid as a differentiator between patients with normal colons, adenomas, and colorectal cancer
AU - Lafleur, Bonnie
AU - Lee, Wooin
AU - Billhiemer, Dean
AU - Lockhart, Craig
AU - Liu, Junmei
AU - Merchant, Nipun
PY - 2011
Y1 - 2011
N2 - In analytic chemistry a detection limit (DL) is the lowest measurable amount of an analyte that can be distinguished from a blank; many biomedical measurement technologies exhibit this property. From a statistical perspective, these data present inferential challenges because instead of precise measures, one only has information that the value is somewhere between 0 and the DL (below detection limit, BDL). Substitution of BDL values, with 0 or the DL can lead to biased parameter estimates and a loss of statistical power. Statistical methods that make adjustments when dealing with these types of data, often called left-censored data, are available in many commercial statistical packages. Despite this availability, the use of these methods is still not widespread in biomedical literature. We have reviewed the statistical approaches of dealing with BDL values, and used simulations to examine the performance of the commonly used substitution methods and the most widely available statistical methods. We have illustrated these methods using a study undertaken at the Vanderbilt-Ingram Cancer Center, to examine the serum bile acid levels in patients with colorectal cancer and adenoma. We have found that the modern methods for BDL values identify disease-related differences that are often missed, with statistically naive approaches.
AB - In analytic chemistry a detection limit (DL) is the lowest measurable amount of an analyte that can be distinguished from a blank; many biomedical measurement technologies exhibit this property. From a statistical perspective, these data present inferential challenges because instead of precise measures, one only has information that the value is somewhere between 0 and the DL (below detection limit, BDL). Substitution of BDL values, with 0 or the DL can lead to biased parameter estimates and a loss of statistical power. Statistical methods that make adjustments when dealing with these types of data, often called left-censored data, are available in many commercial statistical packages. Despite this availability, the use of these methods is still not widespread in biomedical literature. We have reviewed the statistical approaches of dealing with BDL values, and used simulations to examine the performance of the commonly used substitution methods and the most widely available statistical methods. We have illustrated these methods using a study undertaken at the Vanderbilt-Ingram Cancer Center, to examine the serum bile acid levels in patients with colorectal cancer and adenoma. We have found that the modern methods for BDL values identify disease-related differences that are often missed, with statistically naive approaches.
KW - Bile acids
KW - colorectal cancer
KW - detection limits
KW - statistical methods
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U2 - 10.4103/1477-3163.79681
DO - 10.4103/1477-3163.79681
M3 - Review article
C2 - 21712958
AN - SCOPUS:84872737084
SN - 0974-6773
VL - 10
JO - Journal of Carcinogenesis
JF - Journal of Carcinogenesis
M1 - 12
ER -