SCARF: Maximizing next-generation EST assemblies for evolutionary and population genomic analyses

Michael S. Barker; Katrina M. Dlugosch; Chaitanya C.A. Reddy; Sarah N. Amyotte; Loren H. Rieseberg

doi:10.1093/bioinformatics/btp011

SCARF: Maximizing next-generation EST assemblies for evolutionary and population genomic analyses

Michael S. Barker, Katrina M. Dlugosch, Chaitanya C.A. Reddy, Sarah N. Amyotte, Loren H. Rieseberg

Research output: Contribution to journal › Article › peer-review

12 Scopus citations

Abstract

Scaffolded and Corrected Assembly of Roche 454 (SCARF) is a next-generation sequence assembly tool for evolutionary genomics that is designed especially for assembling 454 EST sequences against high-quality reference sequences from related species. The program was created to knit together 454 contigs that do not assemble during traditional de novo assembly, using a reference sequence library to orient the 454 sequences.

Original language	English (US)
Pages (from-to)	535-536
Number of pages	2
Journal	Bioinformatics
Volume	25
Issue number	4
DOIs	https://doi.org/10.1093/bioinformatics/btp011
State	Published - Feb 2009
Externally published	Yes

ASJC Scopus subject areas

Statistics and Probability
Biochemistry
Molecular Biology
Computer Science Applications
Computational Theory and Mathematics
Computational Mathematics

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10.1093/bioinformatics/btp011

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title = "SCARF: Maximizing next-generation EST assemblies for evolutionary and population genomic analyses",

abstract = "Scaffolded and Corrected Assembly of Roche 454 (SCARF) is a next-generation sequence assembly tool for evolutionary genomics that is designed especially for assembling 454 EST sequences against high-quality reference sequences from related species. The program was created to knit together 454 contigs that do not assemble during traditional de novo assembly, using a reference sequence library to orient the 454 sequences.",

author = "Barker, \{Michael S.\} and Dlugosch, \{Katrina M.\} and Reddy, \{Chaitanya C.A.\} and Amyotte, \{Sarah N.\} and Rieseberg, \{Loren H.\}",

note = "Funding Information: Funding: National Science Foundation Plant Genome Award (No. 0421630 to L.H.R.); Natural Sciences and Engineering Research Council of Canada (No. 353026 to L.H.R.).",

year = "2009",

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doi = "10.1093/bioinformatics/btp011",

language = "English (US)",

volume = "25",

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AU - Barker, Michael S.

AU - Dlugosch, Katrina M.

AU - Reddy, Chaitanya C.A.

AU - Amyotte, Sarah N.

AU - Rieseberg, Loren H.

N1 - Funding Information: Funding: National Science Foundation Plant Genome Award (No. 0421630 to L.H.R.); Natural Sciences and Engineering Research Council of Canada (No. 353026 to L.H.R.).

PY - 2009/2

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N2 - Scaffolded and Corrected Assembly of Roche 454 (SCARF) is a next-generation sequence assembly tool for evolutionary genomics that is designed especially for assembling 454 EST sequences against high-quality reference sequences from related species. The program was created to knit together 454 contigs that do not assemble during traditional de novo assembly, using a reference sequence library to orient the 454 sequences.

AB - Scaffolded and Corrected Assembly of Roche 454 (SCARF) is a next-generation sequence assembly tool for evolutionary genomics that is designed especially for assembling 454 EST sequences against high-quality reference sequences from related species. The program was created to knit together 454 contigs that do not assemble during traditional de novo assembly, using a reference sequence library to orient the 454 sequences.

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SCARF: Maximizing next-generation EST assemblies for evolutionary and population genomic analyses

Abstract

ASJC Scopus subject areas

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