Rice Gene Index: A comprehensive pan-genome database for comparative and functional genomics of Asian rice

Zhichao Yu; Yongming Chen; Yong Zhou; Yulu Zhang; Mengyuan Li; Yidan Ouyang; Dmytro Chebotarov; Ramil Mauleon; Hu Zhao; Weibo Xie; Kenneth L. McNally; Rod A. Wing; Weilong Guo; Jianwei - Zhang

doi:10.1016/j.molp.2023.03.012

Rice Gene Index: A comprehensive pan-genome database for comparative and functional genomics of Asian rice

Zhichao Yu
, Yongming Chen
, Yong Zhou
, Yulu Zhang
, Mengyuan Li
, Yidan Ouyang
, Dmytro Chebotarov
, Ramil Mauleon
, Hu Zhao
, Weibo Xie
, Kenneth L. McNally
, Rod A. Wing
, Weilong Guo
, Jianwei - Zhang

Research output: Contribution to journal › Short survey › peer-review

Original language	English (US)
Pages (from-to)	798-801
Number of pages	4
Journal	Molecular Plant
Volume	16
Issue number	5
DOIs	https://doi.org/10.1016/j.molp.2023.03.012
State	Published - May 1 2023
Externally published	Yes

ASJC Scopus subject areas

Molecular Biology
Plant Science

Access to Document

10.1016/j.molp.2023.03.012

Cite this

@article{d6bdbfd205ac4d26aba3abae9226519a,

title = "Rice Gene Index: A comprehensive pan-genome database for comparative and functional genomics of Asian rice",

author = "Zhichao Yu and Yongming Chen and Yong Zhou and Yulu Zhang and Mengyuan Li and Yidan Ouyang and Dmytro Chebotarov and Ramil Mauleon and Hu Zhao and Weibo Xie and McNally, \{Kenneth L.\} and Wing, \{Rod A.\} and Weilong Guo and Zhang, \{Jianwei -\}",

note = "Funding Information: We are thankful for access to the annotation for the Magic 16 gene structure annotation from the Gramene project, specifically K. Chougule, Z. Lu, and D. Ware, supported by USDA 8062-21000-041-00D. We sincerely thank the computing platform of the National Key Laboratory of Crop Genetic Improvement in HZAU and the ibex \& Shaheen Cray XC40 platform at KAUST Supercomputing Laboratory for providing the computational resources. No conflict of interest is declared. Funding Information: This research was supported by Fundamental Research Funds for the Central Universities ( 2662020SKPY010 ), the Major Project of Hubei Hongshan Laboratory ( 2022HSZD031 ), and Huazhong Agricultural University{\textquoteright}s Start-up Fund to J.Z. ",

year = "2023",

month = may,

day = "1",

doi = "10.1016/j.molp.2023.03.012",

language = "English (US)",

volume = "16",

pages = "798--801",

journal = "Molecular Plant",

issn = "1674-2052",

publisher = "Cell Press",

number = "5",

}

TY - JOUR

T1 - Rice Gene Index

T2 - A comprehensive pan-genome database for comparative and functional genomics of Asian rice

AU - Yu, Zhichao

AU - Chen, Yongming

AU - Zhou, Yong

AU - Zhang, Yulu

AU - Li, Mengyuan

AU - Ouyang, Yidan

AU - Chebotarov, Dmytro

AU - Mauleon, Ramil

AU - Zhao, Hu

AU - Xie, Weibo

AU - McNally, Kenneth L.

AU - Wing, Rod A.

AU - Guo, Weilong

AU - Zhang, Jianwei -

N1 - Funding Information: We are thankful for access to the annotation for the Magic 16 gene structure annotation from the Gramene project, specifically K. Chougule, Z. Lu, and D. Ware, supported by USDA 8062-21000-041-00D. We sincerely thank the computing platform of the National Key Laboratory of Crop Genetic Improvement in HZAU and the ibex & Shaheen Cray XC40 platform at KAUST Supercomputing Laboratory for providing the computational resources. No conflict of interest is declared. Funding Information: This research was supported by Fundamental Research Funds for the Central Universities ( 2662020SKPY010 ), the Major Project of Hubei Hongshan Laboratory ( 2022HSZD031 ), and Huazhong Agricultural University’s Start-up Fund to J.Z.

PY - 2023/5/1

Y1 - 2023/5/1

UR - https://www.scopus.com/pages/publications/85153046926

UR - https://www.scopus.com/pages/publications/85153046926#tab=citedBy

U2 - 10.1016/j.molp.2023.03.012

DO - 10.1016/j.molp.2023.03.012

M3 - Short survey

C2 - 36966359

AN - SCOPUS:85153046926

SN - 1674-2052

VL - 16

SP - 798

EP - 801

JO - Molecular Plant

JF - Molecular Plant

IS - 5

ER -

Rice Gene Index: A comprehensive pan-genome database for comparative and functional genomics of Asian rice

ASJC Scopus subject areas

Access to Document

Other files and links

Cite this