MRI template and atlas toolbox for the C57BL/6J mouse brain

Lan Lin; Kewei Chen; Jonathan Valla; Jiping He; Eric M. Reiman; Jean Philippe Galons; Beatrice Hauss-Wegrzyniak; Gene E. Alexander

doi:10.1109/CNE.2005.1419537

MRI template and atlas toolbox for the C57BL/6J mouse brain

Lan Lin, Kewei Chen, Jonathan Valla, Jiping He, Eric M. Reiman, Jean Philippe Galons, Beatrice Hauss-Wegrzyniak, Gene E. Alexander

Medical Imaging

Research output: Contribution to conference › Paper › peer-review

2 Scopus citations

Abstract

In order to compare brain-imaging measurements from different subjects, brain-mapping algorithms are commonly used to register individual brain onto a standardized brain atlas. In this study, SPM99 was used to linearly and nonlinearly coregister a spatially standardized T2-weighted template of C57BL/6J to the atlas by Paxinos and Franklin (2001), local accuracy of between atlas and template was evaluated, and a toolbox was developed. This study provides a foundation for the region of interest analysis for mouse brain images.

Original language	English (US)
Pages	6-8
Number of pages	3
DOIs	https://doi.org/10.1109/CNE.2005.1419537
State	Published - 2005
Event	2nd International IEEE EMBS Conference on Neural Engineering, 2005 - Arlington, VA, United States Duration: Mar 16 2005 → Mar 19 2005

Other

Other	2nd International IEEE EMBS Conference on Neural Engineering, 2005
Country/Territory	United States
City	Arlington, VA
Period	3/16/05 → 3/19/05

ASJC Scopus subject areas

General Engineering

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10.1109/CNE.2005.1419537

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title = "MRI template and atlas toolbox for the C57BL/6J mouse brain",

abstract = "In order to compare brain-imaging measurements from different subjects, brain-mapping algorithms are commonly used to register individual brain onto a standardized brain atlas. In this study, SPM99 was used to linearly and nonlinearly coregister a spatially standardized T2-weighted template of C57BL/6J to the atlas by Paxinos and Franklin (2001), local accuracy of between atlas and template was evaluated, and a toolbox was developed. This study provides a foundation for the region of interest analysis for mouse brain images.",

author = "Lan Lin and Kewei Chen and Jonathan Valla and Jiping He and Reiman, {Eric M.} and Galons, {Jean Philippe} and Beatrice Hauss-Wegrzyniak and Alexander, {Gene E.}",

year = "2005",

doi = "10.1109/CNE.2005.1419537",

language = "English (US)",

pages = "6--8",

note = "2nd International IEEE EMBS Conference on Neural Engineering, 2005 ; Conference date: 16-03-2005 Through 19-03-2005",

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TY - CONF

T1 - MRI template and atlas toolbox for the C57BL/6J mouse brain

AU - Lin, Lan

AU - Chen, Kewei

AU - Valla, Jonathan

AU - He, Jiping

AU - Reiman, Eric M.

AU - Galons, Jean Philippe

AU - Hauss-Wegrzyniak, Beatrice

AU - Alexander, Gene E.

PY - 2005

Y1 - 2005

N2 - In order to compare brain-imaging measurements from different subjects, brain-mapping algorithms are commonly used to register individual brain onto a standardized brain atlas. In this study, SPM99 was used to linearly and nonlinearly coregister a spatially standardized T2-weighted template of C57BL/6J to the atlas by Paxinos and Franklin (2001), local accuracy of between atlas and template was evaluated, and a toolbox was developed. This study provides a foundation for the region of interest analysis for mouse brain images.

AB - In order to compare brain-imaging measurements from different subjects, brain-mapping algorithms are commonly used to register individual brain onto a standardized brain atlas. In this study, SPM99 was used to linearly and nonlinearly coregister a spatially standardized T2-weighted template of C57BL/6J to the atlas by Paxinos and Franklin (2001), local accuracy of between atlas and template was evaluated, and a toolbox was developed. This study provides a foundation for the region of interest analysis for mouse brain images.

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DO - 10.1109/CNE.2005.1419537

M3 - Paper

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EP - 8

T2 - 2nd International IEEE EMBS Conference on Neural Engineering, 2005

Y2 - 16 March 2005 through 19 March 2005

ER -

MRI template and atlas toolbox for the C57BL/6J mouse brain

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