Matrix-isolation FT-IR studies and ab initio calculations of hydrogen-bonded complexes of molecules modeling cytosine or isocytosine tautomers. 5. 1-CH3-cytosine complexes with H2O in Ar matrices

Johan Smets, Ludwik Adamowicz, Guido Maes

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49 Scopus citations

Abstract

The combined experimental and theoretical ab initio method for investigation of hydrogen-bonded complexes between water and molecules modeling cytosines has been applied to 1-CH3-cytosine. This compound occurs in Ar predominantly in the amino-oxo form, but traces of the imino-oxo E tautomer are also present in accordance with the ab initio prediction. An approximate value of 7.2 is obtained for the tautomerization constant KT(a-o/i-o) using the infrared intensity measurement. The most stable H-bonded complex of the abundant a-o tautomer with water is the closed Na3⋯H-O⋯N14 structure, which shows cooperativity between the two H-bonds. Less stable complexes are the closed N3⋯H-O-H⋯O7 complex and the open N14-H⋯OH2 and N14⋯H-OH structures. In the experimental FT-IR spectra, the closed N3⋯H-O⋯H-N14 and open O7⋯H-OH complexes are identified based on characteristic absorptions predicted by ab initio calculations or based on earlier obtained experimental results for similar structures. Despite some trace amounts of the i-o E tautomer in the Ar matrix, H-bonding of this rare form with water was detected in the form of the closed N14⋯H-O⋯H-N3 structure. A preliminary correlation between the frequency shifts of the bonded water stretching mode and the proton affinities of the C=O group is presented for the open C=O⋯H-OH complexes of 1-CH3-cytosine and some related compounds.

Original languageEnglish (US)
Pages (from-to)6434-6444
Number of pages11
JournalJournal of physical chemistry
Volume100
Issue number16
DOIs
StatePublished - Apr 18 1996

ASJC Scopus subject areas

  • General Engineering
  • Physical and Theoretical Chemistry

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