TY - JOUR
T1 - Marine phage genomics
T2 - What have we learned?
AU - Paul, John H.
AU - Sullivan, Matthew B.
N1 - Funding Information:
This work was supported in part by a National Science Foundation Biocomplexity Award to JHP. MBS was supported by a grant from the Gordon and Betty Moore Foundation, NSF and DOE to Sallie W Chisholm.
PY - 2005/6
Y1 - 2005/6
N2 - Marine phages are the most abundant and diverse form of life on the planet, and their genomes have been described as the largest untapped reservoir of genomic information. To date, however, the complete genome sequences of only 17 marine phage are known. Nevertheless, these genomes have revealed some interesting features, including the presence of photosynthetic genes in cyanophage and common patterns of genomic organization. Intriguing findings are also being made from studies of the uncultivated marine viral community genome ('metavirome'). The greatest challenge in interpreting the biology of these phages, and for making comparisons with their terrestrial counterparts, is the high proportion of unidentifiable open reading frames (∼60%). Future studies are likely to focus on sequencing more marine phage genomes from disparate hosts and diverse environments and on further basic studies of the biology of existing marine phages.
AB - Marine phages are the most abundant and diverse form of life on the planet, and their genomes have been described as the largest untapped reservoir of genomic information. To date, however, the complete genome sequences of only 17 marine phage are known. Nevertheless, these genomes have revealed some interesting features, including the presence of photosynthetic genes in cyanophage and common patterns of genomic organization. Intriguing findings are also being made from studies of the uncultivated marine viral community genome ('metavirome'). The greatest challenge in interpreting the biology of these phages, and for making comparisons with their terrestrial counterparts, is the high proportion of unidentifiable open reading frames (∼60%). Future studies are likely to focus on sequencing more marine phage genomes from disparate hosts and diverse environments and on further basic studies of the biology of existing marine phages.
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U2 - 10.1016/j.copbio.2005.03.007
DO - 10.1016/j.copbio.2005.03.007
M3 - Review article
C2 - 15961031
AN - SCOPUS:20444385133
SN - 0958-1669
VL - 16
SP - 299
EP - 307
JO - Current Opinion in Biotechnology
JF - Current Opinion in Biotechnology
IS - 3 SPEC. ISS.
ER -