Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida

Aureliano Bombarely; Michel Moser; Avichai Amrad; Manzhu Bao; Laure Bapaume; Cornelius S. Barry; Mattijs Bliek; Maaike R. Boersma; Lorenzo Borghi; Rémy Bruggmann; Marcel Bucher; Nunzio D'Agostino; Kevin Davies; Uwe Druege; Natalia Dudareva; Marcos Egea-Cortines; Massimo Delledonne; Noe Fernandez-Pozo; Philipp Franken; Laurie Grandont; J. S. Heslop-Harrison; Jennifer Hintzsche; Mitrick Johns; Ronald Koes; Xiaodan Lv; Eric Lyons; Diwa Malla; Enrico Martinoia; Neil S. Mattson; Patrice Morel; Lukas A. Mueller; Joëlle Muhlemann; Eva Nouri; Valentina Passeri; Mario Pezzotti; Qinzhou Qi; Didier Reinhardt; Melanie Rich; Katja R. Richert-Pöggeler; Tim P. Robbins; Michael C. Schatz; M. Eric Schranz; Robert C. Schuurink; Trude Schwarzacher; Kees Spelt; Haibao Tang; Susan L. Urbanus; Michiel Vandenbussche; Kitty Vijverberg; Gonzalo H. Villarino; Ryan M. Warner; Julia Weiss; Zhen Yue; Jan Zethof; Francesca Quattrocchio; Thomas L. Sims; Cris Kuhlemeier

doi:10.1038/nplants.2016.74

Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida

Aureliano Bombarely, Michel Moser, Avichai Amrad, Manzhu Bao, Laure Bapaume, Cornelius S. Barry, Mattijs Bliek, Maaike R. Boersma, Lorenzo Borghi, Rémy Bruggmann, Marcel Bucher, Nunzio D'Agostino, Kevin Davies, Uwe Druege, Natalia Dudareva, Marcos Egea-Cortines, Massimo Delledonne, Noe Fernandez-Pozo, Philipp Franken, Laurie GrandontJ. S. Heslop-Harrison, Jennifer Hintzsche, Mitrick Johns, Ronald Koes, Xiaodan Lv, Eric Lyons, Diwa Malla, Enrico Martinoia, Neil S. Mattson, Patrice Morel, Lukas A. Mueller, Joëlle Muhlemann, Eva Nouri, Valentina Passeri, Mario Pezzotti, Qinzhou Qi, Didier Reinhardt, Melanie Rich, Katja R. Richert-Pöggeler, Tim P. Robbins, Michael C. Schatz, M. Eric Schranz, Robert C. Schuurink, Trude Schwarzacher, Kees Spelt, Haibao Tang, Susan L. Urbanus, Michiel Vandenbussche, Kitty Vijverberg, Gonzalo H. Villarino, Ryan M. Warner, Julia Weiss, Zhen Yue, Jan Zethof, Francesca Quattrocchio, Thomas L. Sims, Cris Kuhlemeier

Research output: Contribution to journal › Article › peer-review

281 Scopus citations

Abstract

Petunia hybrida is a popular bedding plant that has a long history as a genetic model system. We report the whole-genome sequencing and assembly of inbred derivatives of its two wild parents, P. axillaris N and P. inflata S6. The assemblies include 91.3% and 90.2% coverage of their diploid genomes (1.4 Gb; 2n = 14) containing 32,928 and 36,697 protein-coding genes, respectively. The genomes reveal that the Petunia lineage has experienced at least two rounds of hexaploidization: the older gamma event, which is shared with most Eudicots, and a more recent Solanaceae event that is shared with tomato and other solanaceous species. Transcription factors involved in the shift from bee to moth pollination reside in particularly dynamic regions of the genome, which may have been key to the remarkable diversity of floral colour patterns and pollination systems. The high-quality genome sequences will enhance the value of Petunia as a model system for research on unique biological phenomena such as small RNAs, symbiosis, self-incompatibility and circadian rhythms.

Original language	English (US)
Article number	16074
Journal	Nature plants
Volume	2
DOIs	https://doi.org/10.1038/nplants.2016.74
State	Published - May 27 2016

ASJC Scopus subject areas

Plant Science

Access to Document

10.1038/nplants.2016.74

Cite this

Bombarely, A., Moser, M., Amrad, A., Bao, M., Bapaume, L., Barry, C. S., Bliek, M., Boersma, M. R., Borghi, L., Bruggmann, R., Bucher, M., D'Agostino, N., Davies, K., Druege, U., Dudareva, N., Egea-Cortines, M., Delledonne, M., Fernandez-Pozo, N., Franken, P., ... Kuhlemeier, C. (2016). Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida. Nature plants, 2, Article 16074. https://doi.org/10.1038/nplants.2016.74

Bombarely, A, Moser, M, Amrad, A, Bao, M, Bapaume, L, Barry, CS, Bliek, M, Boersma, MR, Borghi, L, Bruggmann, R, Bucher, M, D'Agostino, N, Davies, K, Druege, U, Dudareva, N, Egea-Cortines, M, Delledonne, M, Fernandez-Pozo, N, Franken, P, Grandont, L, Heslop-Harrison, JS, Hintzsche, J, Johns, M, Koes, R, Lv, X, Lyons, E, Malla, D, Martinoia, E, Mattson, NS, Morel, P, Mueller, LA, Muhlemann, J, Nouri, E, Passeri, V, Pezzotti, M, Qi, Q, Reinhardt, D, Rich, M, Richert-Pöggeler, KR, Robbins, TP, Schatz, MC, Schranz, ME, Schuurink, RC, Schwarzacher, T, Spelt, K, Tang, H, Urbanus, SL, Vandenbussche, M, Vijverberg, K, Villarino, GH, Warner, RM, Weiss, J, Yue, Z, Zethof, J, Quattrocchio, F, Sims, TL & Kuhlemeier, C 2016, 'Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida', Nature plants, vol. 2, 16074. https://doi.org/10.1038/nplants.2016.74

@article{32d5821d684644daa12e3f21429ed8fd,

title = "Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida",

abstract = "Petunia hybrida is a popular bedding plant that has a long history as a genetic model system. We report the whole-genome sequencing and assembly of inbred derivatives of its two wild parents, P. axillaris N and P. inflata S6. The assemblies include 91.3% and 90.2% coverage of their diploid genomes (1.4 Gb; 2n = 14) containing 32,928 and 36,697 protein-coding genes, respectively. The genomes reveal that the Petunia lineage has experienced at least two rounds of hexaploidization: the older gamma event, which is shared with most Eudicots, and a more recent Solanaceae event that is shared with tomato and other solanaceous species. Transcription factors involved in the shift from bee to moth pollination reside in particularly dynamic regions of the genome, which may have been key to the remarkable diversity of floral colour patterns and pollination systems. The high-quality genome sequences will enhance the value of Petunia as a model system for research on unique biological phenomena such as small RNAs, symbiosis, self-incompatibility and circadian rhythms.",

author = "Aureliano Bombarely and Michel Moser and Avichai Amrad and Manzhu Bao and Laure Bapaume and Barry, {Cornelius S.} and Mattijs Bliek and Boersma, {Maaike R.} and Lorenzo Borghi and R{\'e}my Bruggmann and Marcel Bucher and Nunzio D'Agostino and Kevin Davies and Uwe Druege and Natalia Dudareva and Marcos Egea-Cortines and Massimo Delledonne and Noe Fernandez-Pozo and Philipp Franken and Laurie Grandont and Heslop-Harrison, {J. S.} and Jennifer Hintzsche and Mitrick Johns and Ronald Koes and Xiaodan Lv and Eric Lyons and Diwa Malla and Enrico Martinoia and Mattson, {Neil S.} and Patrice Morel and Mueller, {Lukas A.} and Jo{\"e}lle Muhlemann and Eva Nouri and Valentina Passeri and Mario Pezzotti and Qinzhou Qi and Didier Reinhardt and Melanie Rich and Richert-P{\"o}ggeler, {Katja R.} and Robbins, {Tim P.} and Schatz, {Michael C.} and Schranz, {M. Eric} and Schuurink, {Robert C.} and Trude Schwarzacher and Kees Spelt and Haibao Tang and Urbanus, {Susan L.} and Michiel Vandenbussche and Kitty Vijverberg and Villarino, {Gonzalo H.} and Warner, {Ryan M.} and Julia Weiss and Zhen Yue and Jan Zethof and Francesca Quattrocchio and Sims, {Thomas L.} and Cris Kuhlemeier",

note = "Publisher Copyright: {\textcopyright} 2016 Macmillan Publishers Limited.",

year = "2016",

month = may,

day = "27",

doi = "10.1038/nplants.2016.74",

language = "English (US)",

volume = "2",

journal = "Nature plants",

issn = "2055-026X",

publisher = "Nature Research",

}

TY - JOUR

T1 - Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida

AU - Bombarely, Aureliano

AU - Moser, Michel

AU - Amrad, Avichai

AU - Bao, Manzhu

AU - Bapaume, Laure

AU - Barry, Cornelius S.

AU - Bliek, Mattijs

AU - Boersma, Maaike R.

AU - Borghi, Lorenzo

AU - Bruggmann, Rémy

AU - Bucher, Marcel

AU - D'Agostino, Nunzio

AU - Davies, Kevin

AU - Druege, Uwe

AU - Dudareva, Natalia

AU - Egea-Cortines, Marcos

AU - Delledonne, Massimo

AU - Fernandez-Pozo, Noe

AU - Franken, Philipp

AU - Grandont, Laurie

AU - Heslop-Harrison, J. S.

AU - Hintzsche, Jennifer

AU - Johns, Mitrick

AU - Koes, Ronald

AU - Lv, Xiaodan

AU - Lyons, Eric

AU - Malla, Diwa

AU - Martinoia, Enrico

AU - Mattson, Neil S.

AU - Morel, Patrice

AU - Mueller, Lukas A.

AU - Muhlemann, Joëlle

AU - Nouri, Eva

AU - Passeri, Valentina

AU - Pezzotti, Mario

AU - Qi, Qinzhou

AU - Reinhardt, Didier

AU - Rich, Melanie

AU - Richert-Pöggeler, Katja R.

AU - Robbins, Tim P.

AU - Schatz, Michael C.

AU - Schranz, M. Eric

AU - Schuurink, Robert C.

AU - Schwarzacher, Trude

AU - Spelt, Kees

AU - Tang, Haibao

AU - Urbanus, Susan L.

AU - Vandenbussche, Michiel

AU - Vijverberg, Kitty

AU - Villarino, Gonzalo H.

AU - Warner, Ryan M.

AU - Weiss, Julia

AU - Yue, Zhen

AU - Zethof, Jan

AU - Quattrocchio, Francesca

AU - Sims, Thomas L.

AU - Kuhlemeier, Cris

PY - 2016/5/27

Y1 - 2016/5/27

N2 - Petunia hybrida is a popular bedding plant that has a long history as a genetic model system. We report the whole-genome sequencing and assembly of inbred derivatives of its two wild parents, P. axillaris N and P. inflata S6. The assemblies include 91.3% and 90.2% coverage of their diploid genomes (1.4 Gb; 2n = 14) containing 32,928 and 36,697 protein-coding genes, respectively. The genomes reveal that the Petunia lineage has experienced at least two rounds of hexaploidization: the older gamma event, which is shared with most Eudicots, and a more recent Solanaceae event that is shared with tomato and other solanaceous species. Transcription factors involved in the shift from bee to moth pollination reside in particularly dynamic regions of the genome, which may have been key to the remarkable diversity of floral colour patterns and pollination systems. The high-quality genome sequences will enhance the value of Petunia as a model system for research on unique biological phenomena such as small RNAs, symbiosis, self-incompatibility and circadian rhythms.

AB - Petunia hybrida is a popular bedding plant that has a long history as a genetic model system. We report the whole-genome sequencing and assembly of inbred derivatives of its two wild parents, P. axillaris N and P. inflata S6. The assemblies include 91.3% and 90.2% coverage of their diploid genomes (1.4 Gb; 2n = 14) containing 32,928 and 36,697 protein-coding genes, respectively. The genomes reveal that the Petunia lineage has experienced at least two rounds of hexaploidization: the older gamma event, which is shared with most Eudicots, and a more recent Solanaceae event that is shared with tomato and other solanaceous species. Transcription factors involved in the shift from bee to moth pollination reside in particularly dynamic regions of the genome, which may have been key to the remarkable diversity of floral colour patterns and pollination systems. The high-quality genome sequences will enhance the value of Petunia as a model system for research on unique biological phenomena such as small RNAs, symbiosis, self-incompatibility and circadian rhythms.

UR - http://www.scopus.com/inward/record.url?scp=84973125236&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=84973125236&partnerID=8YFLogxK

U2 - 10.1038/nplants.2016.74

DO - 10.1038/nplants.2016.74

M3 - Article

C2 - 27255838

AN - SCOPUS:84973125236

SN - 2055-026X

VL - 2

JO - Nature plants

JF - Nature plants

M1 - 16074

ER -

Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida

Abstract

ASJC Scopus subject areas

Access to Document

Other files and links

Fingerprint

Cite this