Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K)

Guangyi Fan; Yue Song; Liandong Yang; Xiaoyun Huang; Suyu Zhang; Mengqi Zhang; Xianwei Yang; Yue Chang; He Zhang; Yongxin Li; Shanshan Liu; Lili Yu; Jeffery Chu; Inge Seim; Chenguang Feng; Thomas J. Near; Rod A. Wing; Wen Wang; K. Kun Wan; Jing Wang; Xun Xu; Huanming Yang; Xin Liu; Nansheng Chen; Shunping He

doi:10.1093/gigascience/giaa080

Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K)

Guangyi Fan, Yue Song, Liandong Yang, Xiaoyun Huang, Suyu Zhang, Mengqi Zhang, Xianwei Yang, Yue Chang, He Zhang, Yongxin Li, Shanshan Liu, Lili Yu, Jeffery Chu, Inge Seim, Chenguang Feng, Thomas J. Near, Rod A. Wing, Wen Wang, K. Kun Wan, Jing WangXun Xu, Huanming Yang, Xin Liu, Nansheng Chen, Shunping He

Research output: Contribution to journal › Article › peer-review

51 Scopus citations

Abstract

Background: With more than 30,000 species, fish-including bony, jawless, and cartilaginous fish-are the largest vertebrate group, and include some of the earliest vertebrates. Despite their critical roles in many ecosystems and human society, fish genomics lags behind work on birds and mammals. This severely limits our understanding of evolution and hinders progress on the conservation and sustainable utilization of fish. Results: Here, we announce the Fish10K project, a portion of the Earth BioGenome Project aiming to sequence 10,000 representative fish genomes in a systematic fashion within 10 years, and we officially welcome collaborators to join this effort. As a step towards this goal, we herein describe a feasible workflow for the procurement and storage of biospecimens, as well as sequencing and assembly strategies. Conclusions: To illustrate, we present the genomes of 10 fish species from a cohort of 93 species chosen for technology development.

Original language	English (US)
Journal	GigaScience
Volume	9
Issue number	8
DOIs	https://doi.org/10.1093/gigascience/giaa080
State	Published - Aug 1 2020
Externally published	Yes

Keywords

Evolution
Fish
Fish10K
Genome sequencing
Phylogenetics
StLFR

ASJC Scopus subject areas

General Medicine

Access to Document

10.1093/gigascience/giaa080

Cite this

Fan, G, Song, Y, Yang, L, Huang, X, Zhang, S, Zhang, M, Yang, X, Chang, Y, Zhang, H, Li, Y, Liu, S, Yu, L, Chu, J, Seim, I, Feng, C, Near, TJ, Wing, RA, Wang, W, Kun Wan, K, Wang, J, Xu, X, Yang, H, Liu, X, Chen, N & He, S 2020, 'Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K)', GigaScience, vol. 9, no. 8. https://doi.org/10.1093/gigascience/giaa080

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abstract = "Background: With more than 30,000 species, fish-including bony, jawless, and cartilaginous fish-are the largest vertebrate group, and include some of the earliest vertebrates. Despite their critical roles in many ecosystems and human society, fish genomics lags behind work on birds and mammals. This severely limits our understanding of evolution and hinders progress on the conservation and sustainable utilization of fish. Results: Here, we announce the Fish10K project, a portion of the Earth BioGenome Project aiming to sequence 10,000 representative fish genomes in a systematic fashion within 10 years, and we officially welcome collaborators to join this effort. As a step towards this goal, we herein describe a feasible workflow for the procurement and storage of biospecimens, as well as sequencing and assembly strategies. Conclusions: To illustrate, we present the genomes of 10 fish species from a cohort of 93 species chosen for technology development.",

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author = "Guangyi Fan and Yue Song and Liandong Yang and Xiaoyun Huang and Suyu Zhang and Mengqi Zhang and Xianwei Yang and Yue Chang and He Zhang and Yongxin Li and Shanshan Liu and Lili Yu and Jeffery Chu and Inge Seim and Chenguang Feng and Near, {Thomas J.} and Wing, {Rod A.} and Wen Wang and {Kun Wan}, K. and Jing Wang and Xun Xu and Huanming Yang and Xin Liu and Nansheng Chen and Shunping He",

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year = "2020",

month = aug,

day = "1",

doi = "10.1093/gigascience/giaa080",

language = "English (US)",

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T1 - Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K)

AU - Fan, Guangyi

AU - Song, Yue

AU - Yang, Liandong

AU - Huang, Xiaoyun

AU - Zhang, Suyu

AU - Zhang, Mengqi

AU - Yang, Xianwei

AU - Chang, Yue

AU - Zhang, He

AU - Li, Yongxin

AU - Liu, Shanshan

AU - Yu, Lili

AU - Chu, Jeffery

AU - Seim, Inge

AU - Feng, Chenguang

AU - Near, Thomas J.

AU - Wing, Rod A.

AU - Wang, Wen

AU - Kun Wan, K.

AU - Wang, Jing

AU - Xu, Xun

AU - Yang, Huanming

AU - Liu, Xin

AU - Chen, Nansheng

AU - He, Shunping

PY - 2020/8/1

Y1 - 2020/8/1

N2 - Background: With more than 30,000 species, fish-including bony, jawless, and cartilaginous fish-are the largest vertebrate group, and include some of the earliest vertebrates. Despite their critical roles in many ecosystems and human society, fish genomics lags behind work on birds and mammals. This severely limits our understanding of evolution and hinders progress on the conservation and sustainable utilization of fish. Results: Here, we announce the Fish10K project, a portion of the Earth BioGenome Project aiming to sequence 10,000 representative fish genomes in a systematic fashion within 10 years, and we officially welcome collaborators to join this effort. As a step towards this goal, we herein describe a feasible workflow for the procurement and storage of biospecimens, as well as sequencing and assembly strategies. Conclusions: To illustrate, we present the genomes of 10 fish species from a cohort of 93 species chosen for technology development.

AB - Background: With more than 30,000 species, fish-including bony, jawless, and cartilaginous fish-are the largest vertebrate group, and include some of the earliest vertebrates. Despite their critical roles in many ecosystems and human society, fish genomics lags behind work on birds and mammals. This severely limits our understanding of evolution and hinders progress on the conservation and sustainable utilization of fish. Results: Here, we announce the Fish10K project, a portion of the Earth BioGenome Project aiming to sequence 10,000 representative fish genomes in a systematic fashion within 10 years, and we officially welcome collaborators to join this effort. As a step towards this goal, we herein describe a feasible workflow for the procurement and storage of biospecimens, as well as sequencing and assembly strategies. Conclusions: To illustrate, we present the genomes of 10 fish species from a cohort of 93 species chosen for technology development.

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KW - Phylogenetics

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Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K)

Abstract

Keywords

ASJC Scopus subject areas

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