TY - JOUR
T1 - Gene sequences of potential targets of insecticidal pf2 lectin identified from the larval de novo transcriptome of the mexican bean weevil (Zabrotes subfasciatus; boheman 1833)
AU - Lagarda-Diaz, Irlanda
AU - Hernández-Oñate, Miguel Ángel
AU - Huerta-Ocampo, José Ángel
AU - Guzmán-Partida, Ana M.
AU - Winzerling, Joy
AU - Geiser, Dawn
AU - Vázquez-Moreno, Luz
N1 - Funding Information:
Funding: This work was supported by funds from the Agricultural Experiment Station, and the College of Agriculture and Life Sciences at the University of Arizona. This research did not receive any specific grant funding from specific agencies in the public, commercial, or not-for-profit sectors.
Publisher Copyright:
© 2020 by the authors. Licensee MDPI, Basel, Switzerland.
PY - 2020/11
Y1 - 2020/11
N2 - The available genomic and proteomic information of non-model organisms is often underrepresented in public databases hindering their study at molecular, cellular, and physiological levels. Information on Zabrotes subfasciatus (Mexican bean weevil) is poorly represented in databases, yet it is a major pest of common beans. We report the transcriptome of Z. subfasciatus larvae; transcripts were sequenced using an Illumina RNA-Seq technology and assembled de novo identifying 29,029 unigenes with an average size of 1168 bp and an N50 value of 2196 bp. About 15,124 unigenes (52%) were functionally annotated and categorized. Further analysis revealed 30 unigene sequences encoding putative targets of the insecticidal PF2 lectin. The complete deduced amino acid sequences of eight selected proteins potentially related to insecticidal mechanism of Palo Fierro 2 (PF2) were used for predicting probable N-glycosylation sites and analyzing phylogenetic relationships with insect sequences. This work provides a dramatic increase in the genetic resources available for Coleopterans and set the basis for developing future studies on biological aspects and potential control strategies for Z. subfasciatus.
AB - The available genomic and proteomic information of non-model organisms is often underrepresented in public databases hindering their study at molecular, cellular, and physiological levels. Information on Zabrotes subfasciatus (Mexican bean weevil) is poorly represented in databases, yet it is a major pest of common beans. We report the transcriptome of Z. subfasciatus larvae; transcripts were sequenced using an Illumina RNA-Seq technology and assembled de novo identifying 29,029 unigenes with an average size of 1168 bp and an N50 value of 2196 bp. About 15,124 unigenes (52%) were functionally annotated and categorized. Further analysis revealed 30 unigene sequences encoding putative targets of the insecticidal PF2 lectin. The complete deduced amino acid sequences of eight selected proteins potentially related to insecticidal mechanism of Palo Fierro 2 (PF2) were used for predicting probable N-glycosylation sites and analyzing phylogenetic relationships with insect sequences. This work provides a dramatic increase in the genetic resources available for Coleopterans and set the basis for developing future studies on biological aspects and potential control strategies for Z. subfasciatus.
KW - Coleopteran insect
KW - Pest insect
KW - RNA-seq
KW - Transcriptomics
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U2 - 10.3390/insects11110736
DO - 10.3390/insects11110736
M3 - Article
AN - SCOPUS:85094570629
SN - 2075-4450
VL - 11
SP - 1
EP - 18
JO - Insects
JF - Insects
IS - 11
M1 - 736
ER -