EPIDEMICS FROM THE EYE OF THE PATHOGEN

Faryad D. Sahneh, William Fries, Joseph C. Watkins, Joceline Lega

Research output: Contribution to journalArticlepeer-review

Abstract

While a common trend in disease modeling is to develop models of increasing complexity, it was recently pointed out that outbreaks appear remarkably simple when viewed in the incidence vs. cumulative cases (ICC) plane. This article details the theory behind this phenomenon by analyzing the stochastic Susceptible, Infected, Recovered (SIR) model in the cumulative cases domain. We prove that the Markov chain associated with this model reduces, in the ICC plane, to a pure birth chain for the cumulative number of cases, whose limit leads to an independent increments Gaussian process that fluctuates about a deterministic ICC curve. We calculate the associated variance and quantify the additional variability due to estimating incidence over a finite period of time. We also illustrate the universality brought forth by the ICC concept on real-world data for Influenza A and for the COVID-19 outbreak in Arizona.

Original languageEnglish (US)
Pages (from-to)2036-2056
Number of pages21
JournalSIAM Journal on Applied Mathematics
Volume82
Issue number6
DOIs
StatePublished - 2022
Externally publishedYes

Keywords

  • Gaussian process
  • complexity reduction
  • cumulative cases
  • epidemics
  • stochastic modeling

ASJC Scopus subject areas

  • Applied Mathematics

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