TY - JOUR
T1 - Compendium of 530 metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean
AU - Tara Oceans Coordinators
AU - Royo-Llonch, Marta
AU - Sánchez, Pablo
AU - Ruiz-González, Clara
AU - Salazar, Guillem
AU - Pedrós-Alió, Carlos
AU - Sebastián, Marta
AU - Labadie, Karine
AU - Paoli, Lucas
AU - M. Ibarbalz, Federico
AU - Zinger, Lucie
AU - Churcheward, Benjamin
AU - Babin, Marcel
AU - Bork, Peer
AU - Boss, Emmanuel
AU - Cochrane, Guy
AU - de Vargas, Colomban
AU - Gorsky, Gabriel
AU - Grimsley, Nigel
AU - Guidi, Lionel
AU - Hingamp, Pascal
AU - Iudicone, Daniele
AU - Jaillon, Olivier
AU - Kandels, Stefanie
AU - Not, Fabrice
AU - Ogata, Hiroyuki
AU - Pesant, Stéphane
AU - Poulton, Nicole
AU - Raes, Jeroen
AU - Sardet, Christian
AU - Speich, Sabrina
AU - Setmmann, Lars
AU - Sullivan, Matthew B.
AU - Chaffron, Samuel
AU - Eveillard, Damien
AU - Karsenti, Eric
AU - Sunagawa, Shinichi
AU - Wincker, Patrick
AU - Karp-Boss, Lee
AU - Bowler, Chris
AU - Acinas, Silvia G.
N1 - Funding Information:
Tara Oceans (which includes both the Tara Oceans and Tara Oceans Polar Circle expeditions) would not exist without the leadership of the Tara Ocean Foundation and the continuous support of 23 institutes (http://oceans.taraexpeditions.org). We thank SHOOK Studio for assistance with designing the figures. This work acknowledges the ‘Severo Ochoa Centre of Excellence’ accreditation (CEX2019-000928-S). We thank the commitment of the following sponsors and research funding agencies: the Spanish Ministry of Economy and Competitiveness (project MAGGY, grant no. CTM2017-87736-R and Polar EcoGen PID2020-116489RB-I00), Horizon 2020-Research and Innovation Framework Programme (Atlantic ECOsystems assessment, forecasting & sustainability, grant no. H2020-BG-2019-2), Centre National de la Recherche Scientifique (in particular Groupement de Recherche GDR3280 and the Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans-GOSEE), European Molecular Biology Laboratory, Genoscope/Commissariat à l’Énergie Atomique et aux Énergies Alternatives, the French Ministry of Research and the French Government’s ‘Investissements d’Avenir’ programmes OCEANOMICS (project no. ANR-11-BTBR-0008), FRANCE GENOMIQUE (project no. ANR-10-INBS-09-08), MEMO LIFE (project no. ANR-10-LABX-54), Paris Sciences et Lettres University (project no.
Publisher Copyright:
© 2021, The Author(s), under exclusive licence to Springer Nature Limited.
PY - 2021/12
Y1 - 2021/12
N2 - The role of the Arctic Ocean ecosystem in climate regulation may depend on the responses of marine microorganisms to environmental change. We applied genome-resolved metagenomics to 41 Arctic seawater samples, collected at various depths in different seasons during the Tara Oceans Polar Circle expedition, to evaluate the ecology, metabolic potential and activity of resident bacteria and archaea. We assembled 530 metagenome-assembled genomes (MAGs) to form the Arctic MAGs catalogue comprising 526 species. A total of 441 MAGs belonged to species that have not previously been reported and 299 genomes showed an exclusively polar distribution. Most Arctic MAGs have large genomes and the potential for fast generation times, both of which may enable adaptation to a copiotrophic lifestyle in nutrient-rich waters. We identified 38 habitat generalists and 111 specialists in the Arctic Ocean. We also found a general prevalence of 14 mixotrophs, while chemolithoautotrophs were mostly present in the mesopelagic layer during spring and autumn. We revealed 62 MAGs classified as key Arctic species, found only in the Arctic Ocean, showing the highest gene expression values and predicted to have habitat-specific traits. The Artic MAGs catalogue will inform our understanding of polar microorganisms that drive global biogeochemical cycles.
AB - The role of the Arctic Ocean ecosystem in climate regulation may depend on the responses of marine microorganisms to environmental change. We applied genome-resolved metagenomics to 41 Arctic seawater samples, collected at various depths in different seasons during the Tara Oceans Polar Circle expedition, to evaluate the ecology, metabolic potential and activity of resident bacteria and archaea. We assembled 530 metagenome-assembled genomes (MAGs) to form the Arctic MAGs catalogue comprising 526 species. A total of 441 MAGs belonged to species that have not previously been reported and 299 genomes showed an exclusively polar distribution. Most Arctic MAGs have large genomes and the potential for fast generation times, both of which may enable adaptation to a copiotrophic lifestyle in nutrient-rich waters. We identified 38 habitat generalists and 111 specialists in the Arctic Ocean. We also found a general prevalence of 14 mixotrophs, while chemolithoautotrophs were mostly present in the mesopelagic layer during spring and autumn. We revealed 62 MAGs classified as key Arctic species, found only in the Arctic Ocean, showing the highest gene expression values and predicted to have habitat-specific traits. The Artic MAGs catalogue will inform our understanding of polar microorganisms that drive global biogeochemical cycles.
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U2 - 10.1038/s41564-021-00979-9
DO - 10.1038/s41564-021-00979-9
M3 - Article
C2 - 34782724
AN - SCOPUS:85119623497
SN - 2058-5276
VL - 6
SP - 1561
EP - 1574
JO - Nature Microbiology
JF - Nature Microbiology
IS - 12
ER -