Code sharing in ecology and evolution increases citation rates but remains uncommon

Brian Maitner, Paul Efren Santos Andrade, Luna Lei, Jamie Kass, Hannah L. Owens, George C.G. Barbosa, Brad Boyle, Matiss Castorena, Brian J. Enquist, Xiao Feng, Daniel S. Park, Andrea Paz, Gonzalo Pinilla-Buitrago, Cory Merow, Adam Wilson

Research output: Contribution to journalArticlepeer-review

Abstract

Biologists increasingly rely on computer code to collect and analyze their data, reinforcing the importance of published code for transparency, reproducibility, training, and a basis for further work. Here, we conduct a literature review estimating temporal trends in code sharing in ecology and evolution publications since 2010, and test for an influence of code sharing on citation rate. We find that code is rarely published (only 6% of papers), with little improvement over time. We also found there may be incentives to publish code: Publications that share code have tended to be low-impact initially, but accumulate citations faster, compensating for this deficit. Studies that additionally meet other Open Science criteria, open-access publication, or data sharing, have still higher citation rates, with publications meeting all three criteria (code sharing, data sharing, and open access publication) tending to have the most citations and highest rate of citation accumulation.

Original languageEnglish (US)
Article numbere70030
JournalEcology and Evolution
Volume14
Issue number8
DOIs
StatePublished - Aug 2024

Keywords

  • R software
  • code sharing
  • open access
  • open data
  • open science
  • reproducibility

ASJC Scopus subject areas

  • Ecology, Evolution, Behavior and Systematics
  • Ecology
  • Nature and Landscape Conservation

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