TY - JOUR
T1 - Architecture and evolution of a minute plant genome
AU - Ibarra-Laclette, Enrique
AU - Lyons, Eric
AU - Hernández-Guzmán, Gustavo
AU - Pérez-Torres, Claudia Anahí
AU - Carretero-Paulet, Lorenzo
AU - Chang, Tien Hao
AU - Lan, Tianying
AU - Welch, Andreanna J.
AU - Juárez, María Jazmín Abraham
AU - Simpson, June
AU - Fernández-Cortés, Araceli
AU - Arteaga-Vázquez, Mario
AU - Góngora-Castillo, Elsa
AU - Acevedo-Hernández, Gustavo
AU - Schuster, Stephan C.
AU - Himmelbauer, Heinz
AU - Minoche, André E.
AU - Xu, Sen
AU - Lynch, Michael
AU - Oropeza-Aburto, Araceli
AU - Cervantes-Pérez, Sergio Alan
AU - De Jesús Ortega-Estrada, María
AU - Cervantes-Luevano, Jacob Israel
AU - Michael, Todd P.
AU - Mockler, Todd
AU - Bryant, Douglas
AU - Herrera-Estrella, Alfredo
AU - Albert, Victor A.
AU - Herrera-Estrella, Luis
N1 - Funding Information:
Acknowledgements We thank I. Bravo-Carmona for growing plants for this research. We also thank T. Mailund for discussion and critical comments on the manuscript, M. Stanke and K. Hoff for their assistance in the use of AUGUSTUS software, and P. Guzmán-Villate for providing the cell suspension used for transient expression assays. Special thanks goes to the members of the ‘laboratorio de servicios genómicos’ of LANGEBIO, CINVESTAV for sequencing services and their help. This research was supported by CONACyT (Mexico) via general support to LANGEBIO, HHMI grant 4367 (to L.H.-E.),the CollegeofArtsand Sciences,UniversityatBuffalo (to V.A.A.),andthe NSF (0922742 to V.A.A.). E.I.-L. is indebted to CONACyT (Mexico) for a PhD fellowship. We acknowledge the US Department of Energy Joint Genome Institute for Mimulus data (available at http://www.phytozome.net/mimulus).
PY - 2013
Y1 - 2013
N2 - It has been argued that the evolution of plant genome size is principally unidirectional and increasing owing to the varied action of whole-genome duplications (WGDs) and mobile element proliferation. However, extreme genome size reductions have been reported in the angiosperm family tree. Here we report the sequence of the 82-megabase genome of the carnivorous bladderwort plant Utricularia gibba. Despite its tiny size, the U. gibba genome accommodates a typical number of genes for a plant, with the main difference from other plant genomes arising from a drastic reduction in non-genic DNA. Unexpectedly, we identified at least three rounds of WGD in U. gibba since common ancestry with tomato (Solanum) and grape (Vitis). The compressed architecture of the U. gibba genome indicates that a small fraction of intergenic DNA, with few or no active retrotransposons, is sufficient to regulate and integrate all the processes required for the development and reproduction of a complex organism.
AB - It has been argued that the evolution of plant genome size is principally unidirectional and increasing owing to the varied action of whole-genome duplications (WGDs) and mobile element proliferation. However, extreme genome size reductions have been reported in the angiosperm family tree. Here we report the sequence of the 82-megabase genome of the carnivorous bladderwort plant Utricularia gibba. Despite its tiny size, the U. gibba genome accommodates a typical number of genes for a plant, with the main difference from other plant genomes arising from a drastic reduction in non-genic DNA. Unexpectedly, we identified at least three rounds of WGD in U. gibba since common ancestry with tomato (Solanum) and grape (Vitis). The compressed architecture of the U. gibba genome indicates that a small fraction of intergenic DNA, with few or no active retrotransposons, is sufficient to regulate and integrate all the processes required for the development and reproduction of a complex organism.
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U2 - 10.1038/nature12132
DO - 10.1038/nature12132
M3 - Article
C2 - 23665961
AN - SCOPUS:84878713991
SN - 0028-0836
VL - 498
SP - 94
EP - 98
JO - Nature
JF - Nature
IS - 7452
ER -