TY - JOUR
T1 - A simple and efficient method for concentration of ocean viruses by chemical flocculation
AU - John, Seth G.
AU - Mendez, Carolina B.
AU - Deng, Li
AU - Poulos, Bonnie
AU - Kauffman, Anne Kathryn M.
AU - Kern, Suzanne
AU - Brum, Jennifer
AU - Polz, Martin F.
AU - Boyle, Edward A.
AU - Sullivan, Matthew B.
PY - 2011/4
Y1 - 2011/4
N2 - Ocean viruses alter ecosystems through host mortality, horizontal gene transfer and by facilitating remineralization of limiting nutrients. However, the study of wild viral populations is limited by inefficient and unreliable concentration techniques. Here, we develop a new technique to recover viruses from natural waters using iron-based flocculation and large-pore-size filtration, followed by resuspension of virus-containing precipitates in a pH 6 buffer. Recovered viruses are amenable to gene sequencing, and a variable proportion of phages, depending upon the phage, retain their infectivity when recovered. This Fe-based virus flocculation, filtration and resuspension method (FFR) is efficient (>90% recovery), reliable, inexpensive and adaptable to many aspects of marine viral ecology and genomics research.
AB - Ocean viruses alter ecosystems through host mortality, horizontal gene transfer and by facilitating remineralization of limiting nutrients. However, the study of wild viral populations is limited by inefficient and unreliable concentration techniques. Here, we develop a new technique to recover viruses from natural waters using iron-based flocculation and large-pore-size filtration, followed by resuspension of virus-containing precipitates in a pH 6 buffer. Recovered viruses are amenable to gene sequencing, and a variable proportion of phages, depending upon the phage, retain their infectivity when recovered. This Fe-based virus flocculation, filtration and resuspension method (FFR) is efficient (>90% recovery), reliable, inexpensive and adaptable to many aspects of marine viral ecology and genomics research.
UR - http://www.scopus.com/inward/record.url?scp=79954570132&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=79954570132&partnerID=8YFLogxK
U2 - 10.1111/j.1758-2229.2010.00208.x
DO - 10.1111/j.1758-2229.2010.00208.x
M3 - Article
AN - SCOPUS:79954570132
SN - 1758-2229
VL - 3
SP - 195
EP - 202
JO - Environmental Microbiology Reports
JF - Environmental Microbiology Reports
IS - 2
ER -