A genome-wide association study platform built on iPlant cyber-infrastructure

Liya Wang; Doreen Ware; Carol Lushbough; Nirav Merchant; Lincoln Stein

doi:10.1002/cpe.3236

A genome-wide association study platform built on iPlant cyber-infrastructure

Liya Wang, Doreen Ware, Carol Lushbough, Nirav Merchant, Lincoln Stein

Research output: Contribution to journal › Article › peer-review

5 Scopus citations

Abstract

Summary We demonstrate a flexible genome-wide association study platform built upon the iPlant Collaborative Cyber-infrastructure. The platform supports big data management, sharing, and large-scale study of both genotype and phenotype data on clusters. End users can add their own analysis tools and create customized analysis workflows through the graphical user interfaces in both iPlant Discovery Environment and BioExtract server.

Original language	English (US)
Pages (from-to)	420-432
Number of pages	13
Journal	Concurrency Computation Practice and Experience
Volume	27
Issue number	2
DOIs	https://doi.org/10.1002/cpe.3236
State	Published - Feb 1 2015

Keywords

BioExtract server
GWAS
iPlant Data Store
iPlant Discovery Environment
iPlant Foundation API

ASJC Scopus subject areas

Theoretical Computer Science
Software
Computer Science Applications
Computer Networks and Communications
Computational Theory and Mathematics

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10.1002/cpe.3236

Cite this

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abstract = "Summary We demonstrate a flexible genome-wide association study platform built upon the iPlant Collaborative Cyber-infrastructure. The platform supports big data management, sharing, and large-scale study of both genotype and phenotype data on clusters. End users can add their own analysis tools and create customized analysis workflows through the graphical user interfaces in both iPlant Discovery Environment and BioExtract server.",

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author = "Liya Wang and Doreen Ware and Carol Lushbough and Nirav Merchant and Lincoln Stein",

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AU - Merchant, Nirav

AU - Stein, Lincoln

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AB - Summary We demonstrate a flexible genome-wide association study platform built upon the iPlant Collaborative Cyber-infrastructure. The platform supports big data management, sharing, and large-scale study of both genotype and phenotype data on clusters. End users can add their own analysis tools and create customized analysis workflows through the graphical user interfaces in both iPlant Discovery Environment and BioExtract server.

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KW - iPlant Discovery Environment

KW - iPlant Foundation API

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A genome-wide association study platform built on iPlant cyber-infrastructure

Abstract

Keywords

ASJC Scopus subject areas

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