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20022022

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Search results

  • Article

    Short-read sequencing for genomic analysis of the brown rot fungus Fibroporia radiculosa

    Tang, J. D., Perkins, A. D., Sonstegard, T. S., Schroeder, S. G., Burgess, S. C. & Diehl, S. V., Apr 2012, In: Applied and environmental microbiology. 78, 7, p. 2272-2281 10 p.

    Research output: Contribution to journalArticlepeer-review

    27 Scopus citations
  • Spatial distribution of CYP2B1/2 messenger RNA within the rat liver acinus following exposure to the inducers phenobarbital and dieldrin

    Dail, M. B., Burgess, S. C., Meek, E. C., Wagner, J., Baravik, J. & Chambers, J. E., Sep 2007, In: Toxicological Sciences. 99, 1, p. 35-42 8 p.

    Research output: Contribution to journalArticlepeer-review

    6 Scopus citations
  • Structural and functional-annotation of an equine whole genome oligoarray

    Bright, L. A., Burgess, S. C., Chowdhary, B., Swiderski, C. E. & McCarthy, F. M., Oct 8 2009, In: BMC bioinformatics. 10, SUPPL. 11, p. S8 1471.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    17 Scopus citations
  • Systemic response to Campylobacter jejuni infection by profiling gene transcription in the spleens of two genetic lines of chickens

    Li, X., Swaggerty, C. L., Kogut, M. H., Chiang, H. I., Wang, Y., Genovese, K. J., He, H., McCarthy, F. M., Burgess, S. C., Pevzner, I. Y. & Zhou, H., Jan 2012, In: Immunogenetics. 64, 1, p. 59-69 11 p.

    Research output: Contribution to journalArticlepeer-review

    22 Scopus citations
  • Systems toxicology identifies mechanistic impacts of 2-amino-4,6-dinitrotoluene (2A-DNT) exposure in Northern Bobwhite

    Gust, K. A., Nanduri, B., Rawat, A., Wilbanks, M. S., Ang, C. Y., Johnson, D. R., Pendarvis, K., Chen, X., Quinn, M. J., Johnson, M. S., Burgess, S. C. & Perkins, E. J., Aug 7 2015, In: BMC genomics. 16, 1, 587.

    Research output: Contribution to journalArticlepeer-review

    8 Scopus citations
  • TAAPP: Tiling array analysis pipeline for prokaryotes

    Kumar, R., Burgess, S. C., Lawrence, M. L. & Nanduri, B., Apr 2011, In: Genomics, Proteomics and Bioinformatics. 9, 1-2, p. 56-62 7 p.

    Research output: Contribution to journalArticlepeer-review

    2 Scopus citations
  • The chicken gene nomenclature committee report

    Burt, D. W., Carrë, W., Fell, M., Law, A. S., Antin, P. B., Maglott, D. R., Weber, J. A., Schmidt, C. J., Burgess, S. C. & McCarthy, F. M., Jul 14 2009, In: BMC genomics. 10, SUPPL. 2, S5.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    26 Scopus citations
  • The Gene Ontology: Enhancements for 2011

    Blake, J. A., Dolan, M., Drabkin, H., Hill, D. P., Ni, L., Sitnikov, D., Burgess, S., Buza, T., Gresham, C., McCarthy, F., Pillai, L., Wang, H., Carbon, S., Lewis, S. E., Mungall, C. J., Gaudet, P., Chisholm, R. L., Fey, P., Kibbe, W. A., Basu, S., & 127 othersSiegele, D. A., McIntosh, B. K., Renfro, D. P., Zweifel, A. E., Hu, J. C., Brown, N. H., Tweedie, S., Alam-Faruque, Y., Apweiler, R., Auchinchloss, A., Axelsen, K., Argoud-Puy, G., Bely, B., Blatter, M. C., Bougueleret, L., Boutet, E., Branconi-Quintaje, S., Breuza, L., Bridge, A., Browne, P., Chan, W. M., Coudert, E., Cusin, I., Dimmer, E., Duek-Roggli, P., Eberhardt, R., Estreicher, A., Famiglietti, L., Ferro-Rojas, S., Feuermann, M., Gardner, M., Gos, A., Gruaz-Gumowski, N., Hinz, U., Hulo, C., Huntley, R., James, J., Jimenez, S., Jungo, F., Keller, G., Laiho, K., Legge, D., Lemercier, P., Lieberherr, D., Magrane, M., Martin, M. J., Masson, P., Moinat, M., O'Donovan, C., Pedruzzi, I., Pichler, K., Poggioli, D., Porras Millán, P., Poux, S., Rivoire, C., Roechert, B., Sawford, T., Schneider, M., Sehra, H., Stanley, E., Stutz, A., Sundaram, S., Tognolli, M., Xenarios, I., Foulger, R., Lomax, J., Roncaglia, P., Camon, E., Khodiyar, V. K., Lovering, R. C., Talmud, P. J., Chibucos, M., Gwinn Giglio, M., Dolinski, K., Heinicke, S., Livstone, M. S., Stephan, R., Harris, M. A., Oliver, S. G., Rutherford, K., Wood, V., Bahler, J., Lock, A., Kersey, P. J., McDowall, M. D., Staines, D. M., Dwinell, M., Shimoyama, M., Laulederkind, S., Hayman, T., Wang, S. J., Petri, V., Lowry, T., D'Eustachio, P., Matthews, L., Amundsen, C. D., Balakrishnan, R., Binkley, G., Cherry, J. M., Christie, K. R., Costanzo, M. C., Dwight, S. S., Engel, S. R., Fisk, D. G., Hirschman, J. E., Hitz, B. C., Hong, E. L., Karra, K., Krieger, C. J., Miyasato, S. R., Nash, R. S., Park, J., Skrzypek, M. S., Weng, S., Wong, E. D., Berardini, T. Z., Li, D., Huala, E., Slonim, D., Wick, H., Thomas, P., Chan, J., Kishore, R., Sternberg, P., Van Auken, K., Howe, D. & Westerfield, M., Jan 2012, In: Nucleic acids research. 40, D1, p. D559-D564

    Research output: Contribution to journalArticlepeer-review

    Open Access
    182 Scopus citations
  • The Gene Ontology in 2010: Extensions and refinements

    Berardini, T. Z., Li, D., Huala, E., Bridges, S., Burgess, S., McCarthy, F., Carbon, S., Lewis, S. E., Mungall, C. J., Abdulla, A., Wood, V., Feltrin, E., Valle, G., Chisholm, R. L., Fey, P., Gaudet, P., Kibbe, W., Basu, S., Bushmanova, Y., Eilbeck, K., & 110 othersSiegele, D. A., McIntosh, B., Renfro, D., Zweifel, A., Hu, J. C., Ashburner, M., Tweedie, S., Alam-Faruque, Y., Apweiler, R., Auchinchloss, A., Bairoch, A., Barrell, D., Binns, D., Blatter, M. C., Bougueleret, L., Boutet, E., Breuza, L., Bridge, A., Browne, P., Chan, W. M., Coudert, E., Daugherty, L., Dimmer, E., Eberhardt, R., Estreicher, A., Famiglietti, L., Ferro-Rojas, S., Feuermann, M., Foulger, R., Gruaz-Gumowski, N., Hinz, U., Huntley, R., Jimenez, S., Jungo, F., Keller, G., Laiho, K., Legge, D., Lemercier, P., Lieberherr, D., Magrane, M., O'Donovan, C., Pedruzzi, I., Poux, S., Rivoire, C., Roechert, B., Sawford, T., Schneider, M., Stanley, E., Stutz, A., Sundaram, S., Tognolli, M., Xenarios, I., Harris, M. A., Deegan, J. I., Ireland, A., Lomax, J., Jaiswal, P., Chibucos, M., Giglio, M. G., Wortman, J., Hannick, L., Madupu, R., Botstein, D., Dolinski, K., Livstone, M. S., Oughtred, R., Blake, J. A., Bult, C., Diehl, A. D., Dolan, M., Drabkin, H., Eppig, J. T., Hill, D. P., Ni, L., Ringwald, M., Sitnikov, D., Collmer, C., Torto-Alalibo, T., Laulederkind, S., Shimoyama, M., Twigger, S., D'Eustachio, P., Matthews, L., Balakrishnan, R., Binkley, G., Cherry, J. M., Christie, K. R., Costanzo, M. C., Engel, S. R., Fisk, D. G., Hirschman, J. E., Hitz, B. C., Hong, E. L., Krieger, C. J., Miyasato, S. R., Nash, R. S., Park, J., Skrzypek, M. S., Weng, S., Wong, E. D., Aslett, M., Chan, J., Kishore, R., Sternberg, P., Auken, K. V., Khodiyar, V. K., Lovering, R. C., Talmud, P. J., Howe, D. & Westerfield, M., Jan 1 2010, In: Nucleic acids research. 38, SUPPL.1, p. D331-D335

    Research output: Contribution to journalArticlepeer-review

    Open Access
    369 Scopus citations
  • The Gene Ontology project in 2008

    The Gene Ontology Consortium, Jan 1 2008, In: Nucleic acids research. 36, SUPPL. 1, p. D440-D444

    Research output: Contribution to journalArticlepeer-review

    Open Access
    590 Scopus citations
  • The neoplastically transformed (CD30hi) Marek's disease lymphoma cell phenotype most closely resembles T-regulatory cells

    Shack, L. A., Buza, J. J. & Burgess, S. C., Aug 2008, In: Cancer Immunology, Immunotherapy. 57, 8, p. 1253-1262 10 p.

    Research output: Contribution to journalArticlepeer-review

    37 Scopus citations
  • The proteogenomic mapping tool

    Sanders, W. S., Wang, N., Bridges, S. M., Malone, B. M., Dandass, Y. S., McCarthy, F. M., Nanduri, B., Lawrence, M. L. & Burgess, S. C., Apr 22 2011, In: BMC bioinformatics. 12, 115.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    33 Scopus citations
  • The transcriptional response of Pasteurella multocida to three classes of antibiotics

    Nanduri, B., Shack, L. A., Burgess, S. C. & Lawrence, M. L., Jul 14 2009, In: BMC genomics. 10, SUPPL. 2, S4.

    Research output: Contribution to journalArticlepeer-review

    12 Scopus citations
  • Third Report on Chicken Genes and Chromosomes 2015:

    Schmid, M., Smith, J., Burt, D. W., Aken, B. L., Antin, P. B., Archibald, A. L., Ashwell, C., Blackshear, P. J., Boschiero, C., Brown, C. T., Burgess, S. C., Cheng, H. H., Chow, W., Coble, D. J., Cooksey, A., Crooijmans, R. P. M. A., Damas, J., Davis, R. V. N., De Koning, D. J., Delany, M. E., & 84 othersDerrien, T., Desta, T. T., Dunn, I. C., Dunn, M., Ellegren, H., Eöry, L., Erb, I., Farré, M., Fasold, M., Fleming, D., Flicek, P., Fowler, K. E., Frésard, L., Froman, D. P., Garceau, V., Gardner, P. P., Gheyas, A. A., Griffin, D. K., Groenen, M. A. M., Haaf, T., Hanotte, O., Hart, A., Häsler, J., Hedges, S. B., Hertel, J., Howe, K., Hubbard, A., Hume, D. A., Kaiser, P., Kedra, D., Kemp, S. J., Klopp, C., Kniel, K. E., Kuo, R., Lagarrigue, S., Lamont, S. J., Larkin, D. M., Lawal, R. A., Markland, S. M., McCarthy, F., McCormack, H. A., McPherson, M. C., Motegi, A., Muljo, S. A., Münsterberg, A., Nag, R., Nanda, I., Neuberger, M., Nitsche, A., Notredame, C., Noyes, H., O'Connor, R., O'Hare, E. A., Oler, A. J., Ommeh, S. C., Pais, H., Persia, M., Pitel, F., Preeyanon, L., Prieto Barja, P., Pritchett, E. M., Rhoads, D. D., Robinson, C. M., Romanov, M. N., Rothschild, M., Roux, P. F., Schmidt, C. J., Schneider, A. S., Schwartz, M. G., Searle, S. M., Skinner, M. A., Smith, C. A., Stadler, P. F., Steeves, T. E., Steinlein, C., Sun, L., Takata, M., Ulitsky, I., Wang, Q., Wang, Y., Warren, W. C., Wood, J. M. D., Wragg, D. & Zhou, H., Aug 20 2015, In: Cytogenetic and Genome Research. 145, 2, p. 78-179 102 p.

    Research output: Contribution to journalArticlepeer-review

    53 Scopus citations
  • Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs

    Green, R. E., Braun, E. L., Armstrong, J., Earl, D., Nguyen, N., Hickey, G., Vandewege, M. W., St John, J. A., Capella-Gutiérrez, S., Castoe, T. A., Kern, C., Fujita, M. K., Opazo, J. C., Jurka, J., Kojima, K. K., Caballero, J., Hubley, R. M., Smit, A. F., Platt, R. N., Lavoie, C. A., & 35 othersRamakodi, M. P., Finger, J. W., Suh, A., Isberg, S. R., Miles, L., Chong, A. Y., Jaratlerdsiri, W., Gongora, J., Moran, C., Iriarte, A., McCormack, J., Burgess, S. C., Edwards, S. V., Lyons, E., Williams, C., Breen, M., Howard, J. T., Gresham, C. R., Peterson, D. G., Schmitz, J., Pollock, D. D., Haussler, D., Triplett, E. W., Zhang, G., Irie, N., Jarvis, E. D., Brochu, C. A., Schmidt, C. J., McCarthy, F. M., Faircloth, B. C., Hoffmann, F. G., Glenn, T. C., Gabaldón, T., Paten, B. & Ray, D. A., 2014, In: Science. 346, 6215, 1254449.

    Research output: Contribution to journalArticlepeer-review

    212 Scopus citations
  • Transcriptome-based differentiation of closely-related Miscanthus lines

    Chouvarine, P., Cooksey, A. M., McCarthy, F. M., Ray, D. A., Baldwin, B. S., Burgess, S. C. & Peterson, D. G., Jan 10 2012, In: PloS one. 7, 1, e29850.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    21 Scopus citations
  • Transcriptome profile of a bovine respiratory disease pathogen: Mannheimia haemolytica PHL213.

    Reddy, J. S., Kumar, R., Watt, J. M., Lawrence, M. L., Burgess, S. C. & Nanduri, B., 2012, In: BMC bioinformatics. 13 Suppl 15, p. S4

    Research output: Contribution to journalArticlepeer-review

    Open Access
    10 Scopus citations
  • Ultrasonic Incisions Produce Less Inflammatory Mediator Response during Early Healing than Electrosurgical Incisions

    Nanduri, B., Pendarvis, K., Shack, L. A., Kumar, R., Clymer, J. W., Korvick, D. L. & Burgess, S. C., Sep 18 2013, In: PloS one. 8, 9, e73032.

    Research output: Contribution to journalArticlepeer-review

    9 Scopus citations