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Rod A Wing

Calculated based on number of publications stored in Pure and citations from Scopus
1985 …2025

Research activity per year

Search results

  • 2009

    Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes

    Lu, F., Ammiraju, J. S. S., Sanyal, A., Zhang, S., Son, R., Chen, J., Li, G., Sui, Y., Song, X., Cheng, Z., De Oliveira, A. C., Bennetzen, J. L., Jackson, S. A., Wing, R. A. & Chena, M., Feb 10 2009, In: Proceedings of the National Academy of Sciences of the United States of America. 106, 6, p. 2071-2076 6 p.

    Research output: Contribution to journal › Article › peer-review

    106 Scopus citations

  • Comparative sequence analysis of the SALT OVERLY SENSITIVE1 orthologous region in Thellungiella halophila and Arabidopsis thaliana

    Nah, G., Pagliarulo, C. L., Mohr, P. G., Luo, M., Sisneros, N., Yu, Y., Collura, K., Currie, J., Goicoechea, J. L., Wing, R. A. & Schumaker, K. S., Sep 2009, In: Genomics. 94, 3, p. 196-203 8 p.

    Research output: Contribution to journal › Article › peer-review

    15 Scopus citations

  • De novo next generation sequencing of plant genomes

    Rounsley, S., Marri, P. R., Yu, Y., He, R., Sisneros, N., Goicoechea, J. L., Lee, S. J., Angelova, A., Kudrna, D., Luo, M., Affourtit, J., Desany, B., Knight, J., Niazi, F., Egholm, M. & Wing, R. A., Mar 2009, In: Rice. 2, 1, p. 35-43 9 p.

    Research output: Contribution to journal › Article › peer-review

    55 Scopus citations

  • Detailed analysis of a contiguous 22-Mb region of the maize genome

    Wei, F., Stein, J. C., Liang, C., Zhang, J., Fulton, R. S., Baucom, R. S., De Paoli, E., Zhou, S., Yang, L., Han, Y., Pasternak, S., Narechania, A., Zhang, L., Yeh, C. T., Ying, K., Nagel, D. H., Collura, K., Kudrna, D., Currie, J. & Lin, J. & 35 others, Kim, H. R., Angelova, A., Scara, G., Wissotski, M., Golser, W., Courtney, L., Kruchowski, S., Graves, T. A., Rock, S. M., Adams, S., Fulton, L. A., Fronick, C., Courtney, W., Kramer, M., Spiegel, L., Nascimento, L., Kalyanaraman, A., Chaparro, C., Deragon, J. M., Miguel, P. S., Jiang, N., Wessler, S. R., Green, P. J., Yu, Y., Schwartz, D. C., Meyers, B. C., Bennetzen, J. L., Martienssen, R. A., McCombie, W. R., Aluru, S., Clifton, S. W., Schnable, P. S., Ware, D., Wilson, R. K. & Wing, R. A., Nov 2009, In: PLoS genetics. 5, 11, e1000728.

    Research output: Contribution to journal › Article › peer-review

    39 Scopus citations

  • Hamiltonella defensa, genome evolution of protective bacterial endosymbiont from pathogenic ancestors

    Degnan, P. H., Yu, Y., Sisneros, N., Wing, R. A. & Moran, N. A., Jun 2 2009, In: Proceedings of the National Academy of Sciences of the United States of America. 106, 22, p. 9063-9068 6 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    199 Scopus citations

  • Human gut microbiota in obesity and after gastric bypass

    Zhang, H., DiBaise, J. K., Zuccolo, A., Kudrna, D., Braidotti, M., Yu, Y., Parameswaran, P., Crowell, M. D., Wing, R., Rittmann, B. E. & Krajmalnik-Brown, R., Feb 17 2009, In: Proceedings of the National Academy of Sciences of the United States of America. 106, 7, p. 2365-2370 6 p.

    Research output: Contribution to journal › Article › peer-review

    1585 Scopus citations

  • Species trees from highly incongruent gene trees in rice

    Cranston, K. A., Hurwitz, B., Ware, D., Stein, L. & Wing, R. A., Oct 2009, In: Systematic biology. 58, 5, p. 489-500 12 p.

    Research output: Contribution to journal › Article › peer-review

    81 Scopus citations

  • The B73 maize genome: Complexity, diversity, and dynamics

    Schnable, P. S., Ware, D., Fulton, R. S., Stein, J. C., Wei, F., Pasternak, S., Liang, C., Zhang, J., Fulton, L., Graves, T. A., Minx, P., Reily, A. D., Courtney, L., Kruchowski, S. S., Tomlinson, C., Strong, C., Delehaunty, K., Fronick, C., Courtney, B. & Rock, S. M. & 137 others, Belter, E., Du, F., Kim, K., Abbott, R. M., Cotton, M., Levy, A., Marchetto, P., Ochoa, K., Jackson, S. M., Gillam, B., Chen, W., Yan, L., Higginbotham, J., Cardenas, M., Waligorski, J., Applebaum, E., Phelps, L., Falcone, J., Kanchi, K., Thane, T., Scimone, A., Thane, N., Henke, J., Wang, T., Ruppert, J., Shah, N., Rotter, K., Hodges, J., Ingenthron, E., Cordes, M., Kohlberg, S., Sgro, J., Delgado, B., Mead, K., Chinwalla, A., Leonard, S., Crouse, K., Collura, K., Kudrna, D., Currie, J., He, R., Angelova, A., Rajasekar, S., Mueller, T., Lomeli, R., Scara, G., Ko, A., Delaney, K., Wissotski, M., Lopez, G., Campos, D., Braidotti, M., Ashley, E., Golser, W., Kim, H., Lee, S., Lin, J., Dujmic, Z., Kim, W., Talag, J., Zuccolo, A., Fan, C., Sebastian, A., Kramer, M., Spiegel, L., Nascimento, L., Zutavern, T., Miller, B., Ambroise, C., Muller, S., Spooner, W., Narechania, A., Ren, L., Wei, S., Kumari, S., Faga, B., Levy, M. J., McMahan, L., Van Buren, P., Vaughn, M. W., Ying, K., Yeh, C. T., Emrich, S. J., Jia, Y., Kalyanaraman, A., Hsia, A. P., Barbazuk, W. B., Baucom, R. S., Brutnell, T. P., Carpita, N. C., Chaparro, C., Chia, J. M., Deragon, J. M., Estill, J. C., Fu, Y., Jeddeloh, J. A., Han, Y., Lee, H., Li, P., Lisch, D. R., Liu, S., Liu, Z., Nagel, D. H., McCann, M. C., Sanmiguel, P., Myers, A. M., Nettleton, D., Nguyen, J., Penning, B. W., Ponnala, L., Schneider, K. L., Schwartz, D. C., Sharma, A., Soderlund, C., Springer, N. M., Sun, Q., Wang, H., Waterman, M., Westerman, R., Wolfgruber, T. K., Yang, L., Yu, Y., Zhang, L., Zhou, S., Zhu, Q., Bennetzen, J. L., Dawe, R. K., Jiang, J., Jiang, N., Presting, G. G., Wessler, S. R., Aluru, S., Martienssen, R. A., Clifton, S. W., McCombie, W. R., Wing, R. A. & Wilson, R. K., Nov 20 2009, In: Science. 326, 5956, p. 1112-1115 4 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    3338 Scopus citations

  • The physical and genetic framework of the maize B73 genome

    Wei, F., Zhang, J., Zhou, S., He, R., Schaeffer, M., Collura, K., Kudrna, D., Faga, B. P., Wissotski, M., Golser, W., Rock, S. M., Graves, T. A., Fulton, R. S., Coe, E., Schnable, P. S., Schwartz, D. C., Ware, D., Clifton, S. W., Wilson, R. K. & Wing, R. A., Nov 2009, In: PLoS genetics. 5, 11, e1000715.

    Research output: Contribution to journal › Article › peer-review

    89 Scopus citations
  • 2008

    A fruitful outcome to the papaya genome project

    Wei, F. & Wing, R. A., Jun 6 2008, In: Genome biology. 9, 6, 227.

    Research output: Contribution to journal › Short survey › peer-review

    Open Access
    8 Scopus citations

  • A phylogenetic analysis of indel dynamics in the cotton genus

    Grover, C. E., Yu, Y., Wing, R. A., Paterson, A. H. & Wendel, J. F., Jul 2008, In: Molecular biology and evolution. 25, 7, p. 1415-1428 14 p.

    Research output: Contribution to journal › Article › peer-review

    40 Scopus citations

  • A versatile transposon-based activation tag vector system for functional genomics in cereals and other monocot plants

    Qu, S., Desai, A., Wing, R. & Sundaresan, V., Jan 2008, In: Plant physiology. 146, 1, p. 189-199 11 p.

    Research output: Contribution to journal › Article › peer-review

    64 Scopus citations

  • Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza

    Kim, H. R., Hurwitz, B., Yu, Y., Collura, K., Gill, N., SanMiguel, P., Mullikin, J. C., Maher, C., Nelson, W., Wissotski, M., Braidotti, M., Kudrna, D., Goicoechea, J. L., Stein, L., Ware, D., Jackson, S. A., Soderlund, C. & Wing, R. A., Feb 28 2008, In: Genome biology. 9, 2, R45.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    77 Scopus citations

  • Construction of an Amaranthus hypochondriacus bacterial artificial chromosome library and genomic sequencing of herbicide target genes

    Maughan, P. J., Sisneros, N., Luo, M., Kudrna, D., Ammiraju, J. S. S. & Wing, R. A., Mar 2008, In: Crop Science. 48, SUPPL. 1, p. S85-S94

    Research output: Contribution to journal › Article › peer-review

    26 Scopus citations

  • Diploid/polyploid syntenic shuttle mapping and haplotype-specific chromosome walking toward a rust resistance gene (Bru1) in highly polyploid sugarcane (2n ∼ 12x ∼ 115)

    Le Cunff, L., Garsmeur, O., Raboin, L. M., Pauquet, J., Telismart, H., Selvi, A., Grivet, L., Philippe, R., Begum, D., Deu, M., Costet, L., Wing, R., Glaszmann, J. C. & D'Hont, A., Sep 2008, In: Genetics. 180, 1, p. 649-660 12 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    110 Scopus citations

  • Dynamic evolution of Oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set

    Ammiraju, J. S. S., Lu, F., Sanyal, A., Yu, Y., Song, X., Jiang, N., Pontaroli, A. C., Rambo, T., Currie, J., Collura, K., Talag, J., Fan, C., Goicoechea, J. L., Zuccolo, A., Chen, J., Bennetzen, J. L., Chen, M., Jackson, S. & Wing, R. A., Dec 2008, In: Plant Cell. 20, 12, p. 3191-3209 19 p.

    Research output: Contribution to journal › Article › peer-review

    103 Scopus citations

  • Evidence of multiple horizontal transfers of the long terminal repeat retrotransposon RIRE1 within the genus Oryza

    Roulin, A., Piegu, B., Wing, R. A. & Panaud, O., Mar 2008, In: Plant Journal. 53, 6, p. 950-959 10 p.

    Research output: Contribution to journal › Article › peer-review

    67 Scopus citations

  • Methylation-sensitive linking libraries enhance gene-enriched sequencing of complex genomes and map DNA methylation domains

    Nelson, W., Luo, M., Ma, J., Estep, M., Estill, J., He, R., Talag, J., Sisneros, N., Kudrna, D., Kim, H. R., Ammiraju, J. S. S., Collura, K., Bharti, A. K., Messing, J., Wing, R. A., SanMiguel, P., Bennetzen, J. L. & Soderlund, C., Dec 19 2008, In: BMC genomics. 9, 621.

    Research output: Contribution to journal › Article › peer-review

    9 Scopus citations

  • Microsatellite discovery from BAC end sequences and genetic mapping to anchor the soybean physical and genetic maps

    Shoemaker, R. C., Grant, D., Olson, T., Warren, W. C., Wing, R., Yu, Y., Kim, H., Cregan, P., Joseph, B., Futrell-Griggs, M., Nelson, W., Davito, J., Walker, J., Wallis, J., Kremitski, C., Scheer, D., Clifton, S. W., Graves, T., Nguyen, H. & Wu, X. & 8 others, Luo, M., Dvorak, J., Nelson, R., Cannon, S., Tomkins, J., Schmutz, J., Stacey, G. & Jackson, S., Apr 2008, In: Genome. 51, 4, p. 294-302 9 p.

    Research output: Contribution to journal › Article › peer-review

    48 Scopus citations

  • Rapid and differential proliferation of the Ty3-Gypsy LTR retrotransposon Atlantys in the genus Oryza

    Zuccolo, A., Ammiraju, J. S. S., Kim, H. R., Sanyal, A., Jackson, S. & Wing, R. A., Sep 2008, In: Rice. 1, 1, p. 85-99 15 p.

    Research output: Contribution to journal › Article › peer-review

    6 Scopus citations

  • The Amborella genome: An evolutionary reference for plant biology

    Soltis, D. E., Albert, V. A., Leebens-Mack, J., Palmer, J. D., Wing, R. A., dePamphilis, C. W., Ma, H., Carlson, J. E., Altman, N., Kim, S., Kerr, P. K., Zuccolo, A. & Soltis, P. S., Mar 10 2008, In: Genome biology. 9, 3, 402.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    56 Scopus citations

  • The promoter signatures in rice LEA genes can be used to build a co-expressing LEA gene network

    Meier, S., Gehring, C., MacPherson, C. R., Kaur, M., Maqungo, M., Reuben, S., Muyanga, S., Shih, M. D., Wei, F. J., Wanchana, S., Mauleon, R., Radovanovic, A., Bruskiewich, R., Tanaka, T., Mohanty, B., Itoh, T., Wing, R., Gojobori, T., Sasaki, T. & Swarup, S. & 2 others, Hsing, Y. I. & Bajic, V. B., Dec 2008, In: Rice. 1, 2, p. 177-187 11 p.

    Research output: Contribution to journal › Article › peer-review

    13 Scopus citations

  • The Rice Annotation Project Database (RAP-DB): 2008 update

    Tanaka, T., Antonio, B. A., Kikuchi, S., Matsumoto, T., Nagamura, Y., Numa, H., Sakai, H., Wu, J., Itoh, T., Sasaki, T., Aono, R., Fujii, Y., Habara, T., Harada, E., Kanno, M., Kawahara, Y., Kawashima, H., Kubooka, H., Matsuya, A. & Nakaoka, H. & 71 others, Saichi, N., Sanbonmatsu, R., Sato, Y., Shinso, Y., Suzuki, M., Takeda, J., Tanino, M., Todokoro, F., Yamaguchi, K., Yamamoto, N., Yamasaki, C., Imanishi, T., Okido, T., Tada, M., Ikeo, K., Tateno, Y., Gojobori, T., Lin, Y. C., Wei, F. J., Hsing, Y., Zhao, Q., Han, B., Kramer, M. R., McCombie, R. W., Lonsdale, D., O’donovan, C. C., Whitfield, E. J., Apweiler, R., Koyanagi, K. O., Khurana, J. P., Raghuvanshi, S., Singh, N. K., Tyagi, A. K., Haberer, G., Fujisawa, M., Hosokawa, S., Ito, Y., Ikawa, H., Shibata, M., Yamamoto, M., Bruskiewich, R. M., Hoen, D. R., Bureau, T. E., Namiki, N., Ohyanagi, H., Sakai, Y., Nobushima, S., Sakata, K., Barrero, R. A., Sato, Y., Souvorov, A., Smith-White, B., Tatusova, T., An, S., An, G., Oota, S., Fuks, G., Messing, J., Christie, K. R., Lieberherr, D., Kim, H., Zuccolo, A., Wing, R. A., Nobuta, K., Green, P. J., Lu, C., Meyers, B. C., Chaparro, C., Piegu, B., Panaud, O. & Echeverria, M., Jan 1 2008, In: Nucleic acids research. 36, SUPPL. 1, p. D1028-D1033

    Research output: Contribution to journal › Article › peer-review

    Open Access
    310 Scopus citations

  • The subtelomere of Oryza sativa chromosome 3 short arm as a hot bed of new gene origination in rice

    Fan, C., Zhang, Y., Yu, Y., Rounsley, S., Long, M. & Wing, R. A., Sep 2008, In: Molecular Plant. 1, 5, p. 839-850 12 p.

    Research output: Contribution to journal › Article › peer-review

    32 Scopus citations
  • 2007

    Changes in regulation of a transcription factor lead to autogamy in cultivated tomatoes

    Chen, K. Y., Cong, B., Wing, R., Vrebalov, J. & Tanksley, S. D., Oct 26 2007, In: Science. 318, 5850, p. 643-645 3 p.

    Research output: Contribution to journal › Article › peer-review

    138 Scopus citations

  • Comparative physical mapping between Oryza sativa (AA genome type) and O. punctata (BB genome type)

    Kim, H. R., San Miguel, P., Nelson, W., Collura, K., Wissotski, M., Walling, J. G., Jun, P. K., Jackson, S. A., Soderlund, C. & Wing, R. A., May 2007, In: Genetics. 176, 1, p. 379-390 12 p.

    Research output: Contribution to journal › Article › peer-review

    45 Scopus citations

  • Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana: The Rice Annotation Project

    Itoh, T., Tanaka, T., Barrero, R. A., Yamasaki, C., Fujii, Y., Hilton, P. B., Antonio, B. A., Aono, H., Apweiler, R., Bruskiewich, R., Bureau, T., Burr, F., De Oliveira, A. C., Fuks, G., Habara, T., Haberer, G., Han, B., Harada, E., Hiraki, A. T. & Hirochika, H. & 75 others, Hoen, D., Hokari, H., Hosokawa, S., Hsing, Y. I., Ikawa, H., Ikeo, K., Imanishi, T., Ito, Y., Jaiswal, P., Kanno, M., Kawahara, Y., Kawamura, T., Kawashima, H., Khurana, J. P., Kikuchi, S., Komatsu, S., Koyanagi, K. O., Kubooka, H., Lieberherr, D., Lin, Y. C., Lonsdale, D., Matsumoto, T., Matsuya, A., McCombie, W. R., Messing, J., Miyao, A., Mulder, N., Nagamura, Y., Nam, J., Namiki, N., Numa, H., Nurimoto, S., O'Donovan, C., Ohyanagi, H., Okido, T., OOta, S., Osato, N., Palmer, L. E., Quetier, F., Raghuvanshi, S., Saichi, N., Sakai, H., Sakai, Y., Sakata, K., Sakurai, T., Sato, F., Sato, Y., Schoof, H., Seki, M., Shibata, M., Shimizu, Y., Shinozaki, K., Shinso, Y., Singh, N. K., Smith-White, B., Takeda, J. I., Tanino, M., Tatusova, T., Thongjuea, S., Todokoro, F., Tsugane, M., Tyagi, A. K., Vanavichit, A., Wang, A., Wing, R. A., Yamaguchi, K., Yamamoto, M., Yamamoto, N., Yu, Y., Zhang, H., Zhao, Q., Higo, K., Burr, B., Gojobori, T. & Sasaki, T., Feb 2007, In: Genome Research. 17, 2, p. 175-183 9 p.

    Research output: Contribution to journal › Article › peer-review

    203 Scopus citations

  • Development of a BAC library for yellow-poplar (Liriodendron tulipifera) and the identification of genes associated with flower development and lignin biosynthesis

    Liang, H., Fang, E. G., Tomkins, J. P., Luo, M., Kudrna, D., Kim, H. R., Arumuganathan, K., Zhao, S., Leebens-Mack, J., Schlarbaum, S. E., Banks, J. A., Depamphilis, C. W., Mandoli, D. F., Wing, R. A. & Carlson, J. E., Jul 2007, In: Tree Genetics and Genomes. 3, 3, p. 215-225 11 p.

    Research output: Contribution to journal › Article › peer-review

    24 Scopus citations

  • Efficacy of clone fingerprinting methodologies

    Nelson, W. M., Dvorak, J., Luo, M. C., Messing, J., Wing, R. A. & Soderlund, C., Jan 2007, In: Genomics. 89, 1, p. 160-165 6 p.

    Research output: Contribution to journal › Article › peer-review

    20 Scopus citations

  • Evolutionary dynamics of an ancient retrotransposon family provides insights into evolution of genome size in the genus Oryza

    Ammiraju, J. S. S., Zuccolo, A., Yu, Y., Song, X., Piegu, B., Chevalier, F., Walling, J. G., Ma, J., Talag, J., Brar, D. S., SanMiguel, P. J., Jiang, N., Jackson, S. A., Panaud, O. & Wing, R. A., Oct 2007, In: Plant Journal. 52, 2, p. 342-351 10 p.

    Research output: Contribution to journal › Article › peer-review

    88 Scopus citations

  • Evolutionary history and positional shift of a rice centromere

    Ma, J., Wing, R. A., Bennetzen, J. L. & Jackson, S. A., Oct 2007, In: Genetics. 177, 2, p. 1217-1220 4 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    26 Scopus citations

  • Evolution of genes and genomes on the Drosophila phylogeny

    Clark, A. G., Eisen, M. B., Smith, D. R., Bergman, C. M., Oliver, B., Markow, T. A., Kaufman, T. C., Kellis, M., Gelbart, W., Iyer, V. N., Pollard, D. A., Sackton, T. B., Larracuente, A. M., Singh, N. D., Abad, J. P., Abt, D. N., Adryan, B., Aguade, M., Akashi, H. & Anderson, W. W. & 395 others, Aquadro, C. F., Ardell, D. H., Arguello, R., Artieri, C. G., Barbash, D. A., Barker, D., Barsanti, P., Batterham, P., Batzoglou, S., Begun, D., Bhutkar, A., Blanco, E., Bosak, S. A., Bradley, R. K., Brand, A. D., Brent, M. R., Brooks, A. N., Brown, R. H., Butlin, R. K., Caggese, C., Calvi, B. R., Bernardo De Carvalho, A., Caspi, A., Castrezana, S., Celniker, S. E., Chang, J. L., Chapple, C., Chatterji, S., Chinwalla, A., Civetta, A., Clifton, S. W., Comeron, J. M., Costello, J. C., Coyne, J. A., Daub, J., David, R. G., Delcher, A. L., Delehaunty, K., Do, C. B., Ebling, H., Edwards, K., Eickbush, T., Evans, J. D., Filipski, A., Findeiß, S., Freyhult, E., Fulton, L., Fulton, R., Garcia, A. C. L., Gardiner, A., Garfield, D. A., Garvin, B. E., Gibson, G., Gilbert, D., Gnerre, S., Godfrey, J., Good, R., Gotea, V., Gravely, B., Greenberg, A. J., Griffiths-Jones, S., Gross, S., Guigo, R., Gustafson, E. A., Haerty, W., Hahn, M. W., Halligan, D. L., Halpern, A. L., Halter, G. M., Han, M. V., Heger, A., Hillier, L. D., Hinrichs, A. S., Holmes, I., Hoskins, R. A., Hubisz, M. J., Hultmark, D., Huntley, M. A., Jaffe, D. B., Jagadeeshan, S., Jeck, W. R., Johnson, J., Jones, C. D., Jordan, W. C., Karpen, G. H., Kataoka, E., Keightley, P. D., Kheradpour, P., Kirkness, E. F., Koerich, L. B., Kristiansen, K., Kudrna, D., Kulathinal, R. J., Kumar, S., Kwok, R., Lander, E., Langley, C. H., Lapoint, R., Lazzaro, B. P., Lee, S. J., Levesque, L., Li, R., Lin, C. F., Lin, M. F., Lindblad-Toh, K., Llopart, A., Long, M., Low, L., Lozovsky, E., Lu, J., Luo, M., Machado, C. A., Makalowski, W., Marzo, M., Matsuda, M., Matzkin, L., McAllister, B., McBride, C. S., McKernan, B., McKernan, K., Mendez-Lago, M., Minx, P., Mollenhauer, M. U., Montooth, K., Mount, S. M., Mu, X., Myers, E., Negre, B., Newfeld, S., Nielsen, R., Noor, M. A. F., O'Grady, P., Pachter, L., Papaceit, M., Parisi, M. J., Parisi, M., Parts, L., Pedersen, J. S., Pesole, G., Phillippy, A. M., Ponting, C. P., Pop, M., Porcelli, D., Powell, J. R., Prohaska, S., Pruitt, K., Puig, M., Quesneville, H., Ravi Ram, K., Rand, D., Rasmussen, M. D., Reed, L. K., Reenan, R., Reily, A., Remington, K. A., Rieger, T. T., Ritchie, M. G., Robin, C., Rogers, Y. H., Rohde, C., Rozas, J., Rubenfield, M. J., Ruiz, A., Russo, S., Salzberg, S. L., Sanchez-Gracia, A., Saranga, D. J., Sato, H., Schaeffer, S. W., Schatz, M. C., Schlenke, T., Schwartz, R., Segarra, C., Singh, R. S., Sirot, L., Sirota, M., Sisneros, N. B., Smith, C. D., Smith, T. F., Spieth, J., Stage, D. E., Stark, A., Stephan, W., Strausberg, R. L., Strempel, S., Sturgill, D., Sutton, G., Sutton, G. G., Tao, W., Teichmann, S., Tobari, Y. N., Tomimura, Y., Tsolas, J. M., Valente, V. L. S., Venter, E., Craig Venter, J., Vicario, S., Vieira, F. G., Vilella, A. J., Villasante, A., Walenz, B., Wang, J., Wasserman, M., Watts, T., Wilson, D., Wilson, R. K., Wing, R. A., Wolfner, M. F., Wong, A., Ka-Shu Wong, G., Wu, C. I., Wu, G., Yamamoto, D., Yang, H. P., Yang, S. P., Yorke, J. A., Yoshida, K., Zdobnov, E., Zhang, P., Zhang, Y., Zimin, A. 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    Research output: Contribution to journal › Article › peer-review

    1608 Scopus citations

  • Magnaporthe grisea infection triggers RNA variation and antisense transcript expression in rice

    Gowda, M., Venu, R. C., Li, H., Jantasuriyarat, C., Chen, S., Bellizzi, M., Pampanwar, V., Kim, H., Dean, R. A., Stahlberg, E., Wing, R., Soderlund, C. & Wang, G. L., May 2007, In: Plant physiology. 144, 1, p. 524-533 10 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    27 Scopus citations

  • Microcolinearity and genome evolution in the AdhA region of diploid and polyploid cotton (Gossypium)

    Grover, C. E., Kim, H., Wing, R. A., Paterson, A. H. & Wendel, J. F., Jun 2007, In: Plant Journal. 50, 6, p. 995-1006 12 p.

    Research output: Contribution to journal › Article › peer-review

    73 Scopus citations

  • Physical and genetic structure of the maize genome reflects its complex evolutionary history

    Wei, F., Coe, E., Nelson, W., Bharti, A. K., Engler, F., Butler, E., Kim, H. R., Goicoechea, J. L., Chen, M., Lee, S., Fuks, G., Sanchez-Villeda, H., Schroeder, S., Fang, Z., McMullen, M., Davis, G., Bowers, J. E., Paterson, A. H., Schaeffer, M. & Gardiner, J. & 4 others, Cone, K., Messing, J., Soderlund, C. & Wing, R. A., Jul 2007, In: PLoS genetics. 3, 7, p. 1254-1263 10 p.

    Research output: Contribution to journal › Article › peer-review

    251 Scopus citations

  • Plant centromere organization: a dynamic structure with conserved functions

    Ma, J., Wing, R. A., Bennetzen, J. L. & Jackson, S. A., Mar 2007, In: Trends in Genetics. 23, 3, p. 134-139 6 p.

    Research output: Contribution to journal › Review article › peer-review

    123 Scopus citations

  • Rice genome sequence: The foundation for understanding the genetic systems

    Matsumoto, T., Wing, R. A., Han, B. & Sasaki, T., 2007, Rice Functional Genomics: Challenges, Progress and Prospects. Springer New York, p. 5-20 16 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter

    4 Scopus citations

  • RL-SAGE and microarray analysis of the rice transcriptome after Rhizoctonia solani infection

    Venu, R. C., Jia, Y., Gowda, M., Jia, M. H., Jantasuriyarat, C., Stahlberg, E., Li, H., Rhineheart, A., Boddhireddy, P., Singh, P., Rutger, N., Kudrna, D., Wing, R., Nelson, J. C. & Wang, G. L., Oct 2007, In: Molecular Genetics and Genomics. 278, 4, p. 421-431 11 p.

    Research output: Contribution to journal › Article › peer-review

    46 Scopus citations

  • The barley ERF-type transcription factor HvRAF confers enhanced pathogen resistance and salt tolerance in Arabidopsis

    Jung, J., Won, S. Y., Suh, S. C., Kim, H., Wing, R., Jeong, Y., Hwang, I. & Kim, M., Feb 2007, In: Planta. 225, 3, p. 575-588 14 p.

    Research output: Contribution to journal › Article › peer-review

    107 Scopus citations

  • The oryza map alignment project (OMAP): A new resource for comparative genome studies within oryza

    Wing, R. A., Kim, H., Goicoechea, J. L., Yu, Y., Kudrna, D., Zuccolo, A., Ammiraju, J. S. S., Luo, M., Nelson, W., Ma, J., Sanmiguel, P., Hurwitz, B., Ware, D., Brar, D., Mackill, D., Soderlund, C., Stein, L. & Jackson, S., 2007, Rice Functional Genomics: Challenges, Progress and Prospects. Springer New York, p. 395-409 15 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter

    11 Scopus citations

  • Transposable element distribution, abundance and role in genome size variation in the genus Oryza

    Zuccolo, A., Sebastian, A., Talag, J., Yu, Y., Kim, H. R., Collura, K., Kudrna, D. & Wing, R. A., 2007, In: BMC Evolutionary Biology. 7, 152.

    Research output: Contribution to journal › Article › peer-review

    93 Scopus citations
  • 2006

    A bacterial artificial chromosome library for Biomphalaria glabrata, intermediate snail host of Schistosoma mansoni

    Adema, C. M., Luo, M. Z., Hanelt, B., Hertel, L. A., Marshall, J. J., Zhang, S. M., DeJong, R. J., Kim, H. R., Kudrna, D., Wing, R. A., Soderlund, C., Knight, M., Lewis, F. A., Caldeira, R. L., Jannotti-Passos, L. K., Carvalho, O. D. S. & Loker, E. S., Oct 2006, In: Memorias do Instituto Oswaldo Cruz. 101, SUPPL. 1, p. 167-177 11 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    34 Scopus citations

  • A global assembly of cotton ESTs

    Udall, J. A., Swanson, J. M., Haller, K., Rapp, R. A., Sparks, M. E., Hatfield, J., Yu, Y., Wu, Y., Dowd, C., Arpat, A. B., Sickler, B. A., Wilkins, T. A., Jin, Y. G., Xiao, Y. C., Scheffler, J., Taliercio, E., Turley, R., McFadden, H., Payton, P. & Klueva, N. & 16 others, Allen, R., Zhang, D., Haigler, C., Wilkerson, C., Suo, J., Schulze, S. R., Pierce, M. L., Essenberg, M., Kim, H. R., Llewellyn, D. J., Dennis, E. S., Kudrna, D., Wing, R., Paterson, A. H., Soderlund, C. & Wendel, J. F., Mar 2006, In: Genome Research. 16, 3, p. 441-450 10 p.

    Research output: Contribution to journal › Article › peer-review

    127 Scopus citations

  • Construction of a nurse shark (Ginglymostoma cirratum) bacterial artificial chromosome (BAC) library and a preliminary genome survey

    Luo, M., Kim, H. R., Kudrna, D., Sisneros, N. B., Lee, S. J., Mueller, C., Collura, K., Zuccolo, A., Buckingham, B., Grim, S. M., Yanagiya, K., Inoko, H., Shiina, T., Flajnik, M. F., Wing, R. A. & Ohta, Y., May 3 2006, In: BMC genomics. 7, 106.

    Research output: Contribution to journal › Article › peer-review

    28 Scopus citations

  • Deep and comparative analysis of the mycelium and appressorium transcriptomes of Magnaporthe grisea using MPSS, RL-SAGE, and oligoarray methods

    Gowda, M., Venu, R. C., Raghupathy, M. B., Nobuta, K., Li, H., Wing, R., Stahlberg, E., Couglan, S., Haudenschild, C. D., Dean, R., Nahm, B. H., Meyers, B. C. & Wang, G. L., 2006, In: BMC genomics. 7, 310.

    Research output: Contribution to journal › Article › peer-review

    55 Scopus citations

  • Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium

    Hawkins, J. S., Kim, H. R., Nason, J. D., Wing, R. A. & Wendel, J. F., 2006, In: Genome Research. 16, 10, p. 1252-1261 10 p.

    Research output: Contribution to journal › Article › peer-review

    357 Scopus citations

  • Doubling genome size without polyploidization: Dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice

    Piegu, B., Guyot, R., Picault, N., Roulin, A., Saniyal, A., Kim, H., Collura, K., Brar, D. S., Jackson, S., Wing, R. A. & Panaud, O., 2006, In: Genome Research. 16, 10, p. 1262-1269 8 p.

    Research output: Contribution to journal › Article › peer-review

    479 Scopus citations

  • Erratum to "Utilization of a zebra finch BAC library to determine the structure of an avian androgen receptor genomic region" [Genomics 87 (2006) 181-190] (DOI:10.1016/j.ygeno.2005.09.005)

    Luo, M., Yu, Y., Kim, H. R., Kudrna, D., Itoh, Y., Agate, R. J., Melamed, E., Goicoechea, J. L., Talag, J., Mueller, C., Wang, W., Currie, J., Sisneros, N. B., Wing, R. A. & Arnold, A. P., May 2006, In: Genomics. 87, 5, p. 678-679 2 p.

    Research output: Contribution to journal › Comment/debate › peer-review

  • Genomic and genetic characterization of rice Cen3 reveals extensive transcription and evolutionary implications of a complex centromere

    Yan, H., Ito, H., Nobuta, K., Ouyang, S., Jin, W., Tian, S., Lu, C., Venu, R. C., Wang, G. L., Green, P. J., Wing, R. A., Buell, C. R., Meyers, B. C. & Jiang, J., Sep 2006, In: Plant Cell. 18, 9, p. 2123-2133 11 p.

    Research output: Contribution to journal › Article › peer-review

    85 Scopus citations

  • Integration of hybridization-based markers (overgos) into physical maps for comparative and evolutionary explorations in the genus Oryza and in Sorghum

    Hass-Jacobus, B. L., Futrell-Griggs, M., Abernathy, B., Westerman, R., Goicoechea, J. L., Stein, J., Klein, P., Hurwitz, B., Zhou, B., Rakhshan, F., Sanyal, A., Gill, N., Lin, J. Y., Walling, J. G., Luo, M. Z., Ammiraju, J. S. S., Kudrna, D., Kim, H. R., Ware, D. & Wing, R. A. & 2 others, San Miguel, P. & Jackson, S. A., Aug 8 2006, In: BMC genomics. 7, 199.

    Research output: Contribution to journal › Article › peer-review

    14 Scopus citations