• Source: Scopus
  • Calculated based on no. of publications stored in Pure and citations from Scopus
1985 …2022

Research activity per year

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Search results

  • 2008

    The Rice Annotation Project Database (RAP-DB): 2008 update

    Tanaka, T., Antonio, B. A., Kikuchi, S., Matsumoto, T., Nagamura, Y., Numa, H., Sakai, H., Wu, J., Itoh, T., Sasaki, T., Aono, R., Fujii, Y., Habara, T., Harada, E., Kanno, M., Kawahara, Y., Kawashima, H., Kubooka, H., Matsuya, A., Nakaoka, H. & 71 others, Saichi, N., Sanbonmatsu, R., Sato, Y., Shinso, Y., Suzuki, M., Takeda, J., Tanino, M., Todokoro, F., Yamaguchi, K., Yamamoto, N., Yamasaki, C., Imanishi, T., Okido, T., Tada, M., Ikeo, K., Tateno, Y., Gojobori, T., Lin, Y. C., Wei, F. J., Hsing, Y., Zhao, Q., Han, B., Kramer, M. R., McCombie, R. W., Lonsdale, D., O’donovan, C. C., Whitfield, E. J., Apweiler, R., Koyanagi, K. O., Khurana, J. P., Raghuvanshi, S., Singh, N. K., Tyagi, A. K., Haberer, G., Fujisawa, M., Hosokawa, S., Ito, Y., Ikawa, H., Shibata, M., Yamamoto, M., Bruskiewich, R. M., Hoen, D. R., Bureau, T. E., Namiki, N., Ohyanagi, H., Sakai, Y., Nobushima, S., Sakata, K., Barrero, R. A., Sato, Y., Souvorov, A., Smith-White, B., Tatusova, T., An, S., An, G., Oota, S., Fuks, G., Messing, J., Christie, K. R., Lieberherr, D., Kim, H., Zuccolo, A., Wing, R. A., Nobuta, K., Green, P. J., Lu, C., Meyers, B. C., Chaparro, C., Piegu, B., Panaud, O. & Echeverria, M., Jan 1 2008, In: Nucleic acids research. 36, SUPPL. 1, p. D1028-D1033

    Research output: Contribution to journalArticlepeer-review

    Open Access
    284 Scopus citations
  • The subtelomere of Oryza sativa chromosome 3 short arm as a hot bed of new gene origination in rice

    Fan, C., Zhang, Y., Yu, Y., Rounsley, S., Long, M. & Wing, R. A., Sep 2008, In: Molecular Plant. 1, 5, p. 839-850 12 p.

    Research output: Contribution to journalArticlepeer-review

    27 Scopus citations
  • 2007

    Changes in regulation of a transcription factor lead to autogamy in cultivated tomatoes

    Chen, K. Y., Cong, B., Wing, R., Vrebalov, J. & Tanksley, S. D., Oct 26 2007, In: Science. 318, 5850, p. 643-645 3 p.

    Research output: Contribution to journalArticlepeer-review

    107 Scopus citations
  • Comparative physical mapping between Oryza sativa (AA genome type) and O. punctata (BB genome type)

    Kim, H. R., San Miguel, P., Nelson, W., Collura, K., Wissotski, M., Walling, J. G., Jun, P. K., Jackson, S. A., Soderlund, C. & Wing, R. A., May 2007, In: Genetics. 176, 1, p. 379-390 12 p.

    Research output: Contribution to journalArticlepeer-review

    39 Scopus citations
  • Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana: The Rice Annotation Project

    Itoh, T., Tanaka, T., Barrero, R. A., Yamasaki, C., Fujii, Y., Hilton, P. B., Antonio, B. A., Aono, H., Apweiler, R., Bruskiewich, R., Bureau, T., Burr, F., De Oliveira, A. C., Fuks, G., Habara, T., Haberer, G., Han, B., Harada, E., Hiraki, A. T., Hirochika, H. & 75 others, Hoen, D., Hokari, H., Hosokawa, S., Hsing, Y. I., Ikawa, H., Ikeo, K., Imanishi, T., Ito, Y., Jaiswal, P., Kanno, M., Kawahara, Y., Kawamura, T., Kawashima, H., Khurana, J. P., Kikuchi, S., Komatsu, S., Koyanagi, K. O., Kubooka, H., Lieberherr, D., Lin, Y. C., Lonsdale, D., Matsumoto, T., Matsuya, A., McCombie, W. R., Messing, J., Miyao, A., Mulder, N., Nagamura, Y., Nam, J., Namiki, N., Numa, H., Nurimoto, S., O'Donovan, C., Ohyanagi, H., Okido, T., OOta, S., Osato, N., Palmer, L. E., Quetier, F., Raghuvanshi, S., Saichi, N., Sakai, H., Sakai, Y., Sakata, K., Sakurai, T., Sato, F., Sato, Y., Schoof, H., Seki, M., Shibata, M., Shimizu, Y., Shinozaki, K., Shinso, Y., Singh, N. K., Smith-White, B., Takeda, J. I., Tanino, M., Tatusova, T., Thongjuea, S., Todokoro, F., Tsugane, M., Tyagi, A. K., Vanavichit, A., Wang, A., Wing, R. A., Yamaguchi, K., Yamamoto, M., Yamamoto, N., Yu, Y., Zhang, H., Zhao, Q., Higo, K., Burr, B., Gojobori, T. & Sasaki, T., Feb 2007, In: Genome Research. 17, 2, p. 175-183 9 p.

    Research output: Contribution to journalArticlepeer-review

    192 Scopus citations
  • Development of a BAC library for yellow-poplar (Liriodendron tulipifera) and the identification of genes associated with flower development and lignin biosynthesis

    Liang, H., Fang, E. G., Tomkins, J. P., Luo, M., Kudrna, D., Kim, H. R., Arumuganathan, K., Zhao, S., Leebens-Mack, J., Schlarbaum, S. E., Banks, J. A., Depamphilis, C. W., Mandoli, D. F., Wing, R. A. & Carlson, J. E., Jul 2007, In: Tree Genetics and Genomes. 3, 3, p. 215-225 11 p.

    Research output: Contribution to journalArticlepeer-review

    24 Scopus citations
  • Efficacy of clone fingerprinting methodologies

    Nelson, W. M., Dvorak, J., Luo, M. C., Messing, J., Wing, R. A. & Soderlund, C., Jan 2007, In: Genomics. 89, 1, p. 160-165 6 p.

    Research output: Contribution to journalArticlepeer-review

    20 Scopus citations
  • Evolutionary dynamics of an ancient retrotransposon family provides insights into evolution of genome size in the genus Oryza

    Ammiraju, J. S. S., Zuccolo, A., Yu, Y., Song, X., Piegu, B., Chevalier, F., Walling, J. G., Ma, J., Talag, J., Brar, D. S., SanMiguel, P. J., Jiang, N., Jackson, S. A., Panaud, O. & Wing, R. A., Oct 2007, In: Plant Journal. 52, 2, p. 342-351 10 p.

    Research output: Contribution to journalArticlepeer-review

    73 Scopus citations
  • Evolutionary history and positional shift of a rice centromere

    Ma, J., Wing, R. A., Bennetzen, J. L. & Jackson, S. A., Oct 2007, In: Genetics. 177, 2, p. 1217-1220 4 p.

    Research output: Contribution to journalArticlepeer-review

    26 Scopus citations
  • Evolution of genes and genomes on the Drosophila phylogeny

    Clark, A. G., Eisen, M. B., Smith, D. R., Bergman, C. M., Oliver, B., Markow, T. A., Kaufman, T. C., Kellis, M., Gelbart, W., Iyer, V. N., Pollard, D. A., Sackton, T. B., Larracuente, A. M., Singh, N. D., Abad, J. P., Abt, D. N., Adryan, B., Aguade, M., Akashi, H., Anderson, W. W. & 395 others, Aquadro, C. F., Ardell, D. H., Arguello, R., Artieri, C. G., Barbash, D. A., Barker, D., Barsanti, P., Batterham, P., Batzoglou, S., Begun, D., Bhutkar, A., Blanco, E., Bosak, S. A., Bradley, R. K., Brand, A. D., Brent, M. R., Brooks, A. N., Brown, R. H., Butlin, R. K., Caggese, C., Calvi, B. R., Bernardo De Carvalho, A., Caspi, A., Castrezana, S., Celniker, S. E., Chang, J. L., Chapple, C., Chatterji, S., Chinwalla, A., Civetta, A., Clifton, S. W., Comeron, J. M., Costello, J. C., Coyne, J. A., Daub, J., David, R. G., Delcher, A. L., Delehaunty, K., Do, C. B., Ebling, H., Edwards, K., Eickbush, T., Evans, J. D., Filipski, A., Findeiß, S., Freyhult, E., Fulton, L., Fulton, R., Garcia, A. C. L., Gardiner, A., Garfield, D. A., Garvin, B. E., Gibson, G., Gilbert, D., Gnerre, S., Godfrey, J., Good, R., Gotea, V., Gravely, B., Greenberg, A. J., Griffiths-Jones, S., Gross, S., Guigo, R., Gustafson, E. A., Haerty, W., Hahn, M. W., Halligan, D. L., Halpern, A. L., Halter, G. M., Han, M. V., Heger, A., Hillier, L. D., Hinrichs, A. S., Holmes, I., Hoskins, R. A., Hubisz, M. J., Hultmark, D., Huntley, M. A., Jaffe, D. B., Jagadeeshan, S., Jeck, W. R., Johnson, J., Jones, C. D., Jordan, W. C., Karpen, G. H., Kataoka, E., Keightley, P. D., Kheradpour, P., Kirkness, E. F., Koerich, L. B., Kristiansen, K., Kudrna, D., Kulathinal, R. J., Kumar, S., Kwok, R., Lander, E., Langley, C. H., Lapoint, R., Lazzaro, B. P., Lee, S. J., Levesque, L., Li, R., Lin, C. F., Lin, M. F., Lindblad-Toh, K., Llopart, A., Long, M., Low, L., Lozovsky, E., Lu, J., Luo, M., Machado, C. A., Makalowski, W., Marzo, M., Matsuda, M., Matzkin, L., McAllister, B., McBride, C. S., McKernan, B., McKernan, K., Mendez-Lago, M., Minx, P., Mollenhauer, M. U., Montooth, K., Mount, S. M., Mu, X., Myers, E., Negre, B., Newfeld, S., Nielsen, R., Noor, M. A. F., O'Grady, P., Pachter, L., Papaceit, M., Parisi, M. J., Parisi, M., Parts, L., Pedersen, J. S., Pesole, G., Phillippy, A. M., Ponting, C. P., Pop, M., Porcelli, D., Powell, J. R., Prohaska, S., Pruitt, K., Puig, M., Quesneville, H., Ravi Ram, K., Rand, D., Rasmussen, M. D., Reed, L. K., Reenan, R., Reily, A., Remington, K. A., Rieger, T. T., Ritchie, M. G., Robin, C., Rogers, Y. H., Rohde, C., Rozas, J., Rubenfield, M. J., Ruiz, A., Russo, S., Salzberg, S. L., Sanchez-Gracia, A., Saranga, D. J., Sato, H., Schaeffer, S. W., Schatz, M. C., Schlenke, T., Schwartz, R., Segarra, C., Singh, R. S., Sirot, L., Sirota, M., Sisneros, N. B., Smith, C. D., Smith, T. F., Spieth, J., Stage, D. E., Stark, A., Stephan, W., Strausberg, R. L., Strempel, S., Sturgill, D., Sutton, G., Sutton, G. G., Tao, W., Teichmann, S., Tobari, Y. N., Tomimura, Y., Tsolas, J. M., Valente, V. L. S., Venter, E., Craig Venter, J., Vicario, S., Vieira, F. G., Vilella, A. J., Villasante, A., Walenz, B., Wang, J., Wasserman, M., Watts, T., Wilson, D., Wilson, R. K., Wing, R. A., Wolfner, M. F., Wong, A., Ka-Shu Wong, G., Wu, C. I., Wu, G., Yamamoto, D., Yang, H. P., Yang, S. P., Yorke, J. A., Yoshida, K., Zdobnov, E., Zhang, P., Zhang, Y., Zimin, A. V., Baldwin, J., Abdouelleil, A., Abdulkadir, J., Abebe, A., Abera, B., Abreu, J., Christophe Acer, S., Aftuck, L., Alexander, A., An, P., Anderson, E., Anderson, S., Arachi, H., Azer, M., Bachantsang, P., Barry, A., Bayul, T., Berlin, A., Bessette, D., Bloom, T., Blye, J., Boguslavskiy, L., Bonnet, C., Boukhgalter, B., Bourzgui, I., Brown, A., Cahill, P., Channer, S., Cheshatsang, Y., Chuda, L., Citroen, M., Collymore, A., Cooke, P., Costello, M., D'Aco, K., Daza, R., De Haan, G., Degray, S., Demaso, C., Dhargay, N., Dooley, K., Dooley, E., Doricent, M., Dorje, P., Dorjee, K., Dupes, A., Elong, R., Falk, J., Farina, A., Faro, S., Ferguson, D., Fisher, S., Foley, C. D., Franke, A., Friedrich, D., Gadbois, L., Gearin, G., Gearin, C. R., Giannoukos, G., Goode, T., Graham, J., Grandbois, E., Grewal, S., Gyaltsen, K., Hafez, N., Hagos, B., Hall, J., Henson, C., Hollinger, A., Honan, T., Huard, M. D., Hughes, L., Hurhula, B., Erii Husby, M., Kamat, A., Kanga, B., Kashin, S., Khazanovich, D., Kisner, P., Lance, K., Lara, M., Lee, W., Lennon, N., Letendre, F., Levine, R., Lipovsky, A., Liu, X., Liu, J., Liu, S., Lokyitsang, T., Lokyitsang, Y., Lubonja, R., Lui, A., MacDonald, P., Magnisalis, V., Maru, K., Matthews, C., McCusker, W., McDonough, S., Mehta, T., Meldrim, J., Meneus, L., Mihai, O., Mihalev, A., Mihova, T., Mittelman, R., Mlenga, V., Montmayeur, A., Mulrain, L., Navidi, A., Naylor, J., Negash, T., Nguyen, T., Nguyen, N., Nicol, R., Norbu, C., Norbu, N., Novod, N., O'Neill, B., Osman, S., Markiewicz, E., Oyono, O. L., Patti, C., Phunkhang, P., Pierre, F., Priest, M., Raghuraman, S., Rege, F., Reyes, R., Rise, C., Rogov, P., Ross, K., Ryan, E., Settipalli, S., Shea, T., Sherpa, N., Shi, L., Shih, D., Sparrow, T., Spaulding, J., Stalker, J., Stange-Thomann, N., Stavropoulos, S., Stone, C., Strader, C., Tesfaye, S., Thomson, T., Thoulutsang, Y., Thoulutsang, D., Topham, K., Topping, I., Tsamla, T., Vassiliev, H., Vo, A., Wangchuk, T., Wangdi, T., Weiand, M., Wilkinson, J., Wilson, A., Yadav, S., Young, G., Yu, Q., Zembek, L., Zhong, D., Zimmer, A., Zwirko, Z., Alvarez, P., Brockman, W., Butler, J., Chin, C., Grabherr, M., Kleber, M., Mauceli, E. & MacCallum, I., Nov 8 2007, In: Nature. 450, 7167, p. 203-218 16 p.

    Research output: Contribution to journalArticlepeer-review

    1493 Scopus citations
  • Magnaporthe grisea infection triggers RNA variation and antisense transcript expression in rice

    Gowda, M., Venu, R. C., Li, H., Jantasuriyarat, C., Chen, S., Bellizzi, M., Pampanwar, V., Kim, H., Dean, R. A., Stahlberg, E., Wing, R., Soderlund, C. & Wang, G. L., May 2007, In: Plant physiology. 144, 1, p. 524-533 10 p.

    Research output: Contribution to journalArticlepeer-review

    25 Scopus citations
  • Microcolinearity and genome evolution in the AdhA region of diploid and polyploid cotton (Gossypium)

    Grover, C. E., Kim, H., Wing, R. A., Paterson, A. H. & Wendel, J. F., Jun 2007, In: Plant Journal. 50, 6, p. 995-1006 12 p.

    Research output: Contribution to journalArticlepeer-review

    66 Scopus citations
  • Physical and genetic structure of the maize genome reflects its complex evolutionary history

    Wei, F., Coe, E., Nelson, W., Bharti, A. K., Engler, F., Butler, E., Kim, H. R., Goicoechea, J. L., Chen, M., Lee, S., Fuks, G., Sanchez-Villeda, H., Schroeder, S., Fang, Z., McMullen, M., Davis, G., Bowers, J. E., Paterson, A. H., Schaeffer, M., Gardiner, J. & 4 others, Cone, K., Messing, J., Soderlund, C. & Wing, R. A., Jul 2007, In: PLoS genetics. 3, 7, p. 1254-1263 10 p.

    Research output: Contribution to journalArticlepeer-review

    227 Scopus citations
  • Plant centromere organization: a dynamic structure with conserved functions

    Ma, J., Wing, R. A., Bennetzen, J. L. & Jackson, S. A., Mar 2007, In: Trends in Genetics. 23, 3, p. 134-139 6 p.

    Research output: Contribution to journalReview articlepeer-review

    110 Scopus citations
  • Rice genome sequence: The foundation for understanding the genetic systems

    Matsumoto, T., Wing, R. A., Han, B. & Sasaki, T., 2007, Rice Functional Genomics: Challenges, Progress and Prospects. Springer New York, p. 5-20 16 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

    4 Scopus citations
  • RL-SAGE and microarray analysis of the rice transcriptome after Rhizoctonia solani infection

    Venu, R. C., Jia, Y., Gowda, M., Jia, M. H., Jantasuriyarat, C., Stahlberg, E., Li, H., Rhineheart, A., Boddhireddy, P., Singh, P., Rutger, N., Kudrna, D., Wing, R., Nelson, J. C. & Wang, G. L., Oct 2007, In: Molecular Genetics and Genomics. 278, 4, p. 421-431 11 p.

    Research output: Contribution to journalArticlepeer-review

    42 Scopus citations
  • The barley ERF-type transcription factor HvRAF confers enhanced pathogen resistance and salt tolerance in Arabidopsis

    Jung, J., Won, S. Y., Suh, S. C., Kim, H., Wing, R., Jeong, Y., Hwang, I. & Kim, M., Feb 2007, In: Planta. 225, 3, p. 575-588 14 p.

    Research output: Contribution to journalArticlepeer-review

    88 Scopus citations
  • The oryza map alignment project (OMAP): A new resource for comparative genome studies within oryza

    Wing, R. A., Kim, H., Goicoechea, J. L., Yu, Y., Kudrna, D., Zuccolo, A., Ammiraju, J. S. S., Luo, M., Nelson, W., Ma, J., Sanmiguel, P., Hurwitz, B., Ware, D., Brar, D., Mackill, D., Soderlund, C., Stein, L. & Jackson, S., 2007, Rice Functional Genomics: Challenges, Progress and Prospects. Springer New York, p. 395-409 15 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

    9 Scopus citations
  • Transposable element distribution, abundance and role in genome size variation in the genus Oryza

    Zuccolo, A., Sebastian, A., Talag, J., Yu, Y., Kim, H. R., Collura, K., Kudrna, D. & Wing, R. A., 2007, In: BMC Evolutionary Biology. 7, 152.

    Research output: Contribution to journalArticlepeer-review

    85 Scopus citations
  • 2006

    A bacterial artificial chromosome library for Biomphalaria glabrata, intermediate snail host of Schistosoma mansoni

    Adema, C. M., Luo, M. Z., Hanelt, B., Hertel, L. A., Marshall, J. J., Zhang, S. M., DeJong, R. J., Kim, H. R., Kudrna, D., Wing, R. A., Soderlund, C., Knight, M., Lewis, F. A., Caldeira, R. L., Jannotti-Passos, L. K., Carvalho, O. D. S. & Loker, E. S., Oct 2006, In: Memorias do Instituto Oswaldo Cruz. 101, SUPPL. 1, p. 167-177 11 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    33 Scopus citations
  • A global assembly of cotton ESTs

    Udall, J. A., Swanson, J. M., Haller, K., Rapp, R. A., Sparks, M. E., Hatfield, J., Yu, Y., Wu, Y., Dowd, C., Arpat, A. B., Sickler, B. A., Wilkins, T. A., Jin, Y. G., Xiao, Y. C., Scheffler, J., Taliercio, E., Turley, R., McFadden, H., Payton, P., Klueva, N. & 16 others, Allen, R., Zhang, D., Haigler, C., Wilkerson, C., Suo, J., Schulze, S. R., Pierce, M. L., Essenberg, M., Kim, H. R., Llewellyn, D. J., Dennis, E. S., Kudrna, D., Wing, R., Paterson, A. H., Soderlund, C. & Wendel, J. F., Mar 2006, In: Genome Research. 16, 3, p. 441-450 10 p.

    Research output: Contribution to journalArticlepeer-review

    123 Scopus citations
  • Construction of a nurse shark (Ginglymostoma cirratum) bacterial artificial chromosome (BAC) library and a preliminary genome survey

    Luo, M., Kim, H. R., Kudrna, D., Sisneros, N. B., Lee, S. J., Mueller, C., Collura, K., Zuccolo, A., Buckingham, B., Grim, S. M., Yanagiya, K., Inoko, H., Shiina, T., Flajnik, M. F., Wing, R. A. & Ohta, Y., May 3 2006, In: BMC genomics. 7, 106.

    Research output: Contribution to journalArticlepeer-review

    25 Scopus citations
  • Deep and comparative analysis of the mycelium and appressorium transcriptomes of Magnaporthe grisea using MPSS, RL-SAGE, and oligoarray methods

    Gowda, M., Venu, R. C., Raghupathy, M. B., Nobuta, K., Li, H., Wing, R., Stahlberg, E., Couglan, S., Haudenschild, C. D., Dean, R., Nahm, B. H., Meyers, B. C. & Wang, G. L., 2006, In: BMC genomics. 7, 310.

    Research output: Contribution to journalArticlepeer-review

    50 Scopus citations
  • Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium

    Hawkins, J. S., Kim, H. R., Nason, J. D., Wing, R. A. & Wendel, J. F., 2006, In: Genome Research. 16, 10, p. 1252-1261 10 p.

    Research output: Contribution to journalArticlepeer-review

    318 Scopus citations
  • Doubling genome size without polyploidization: Dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice

    Piegu, B., Guyot, R., Picault, N., Roulin, A., Saniyal, A., Kim, H., Collura, K., Brar, D. S., Jackson, S., Wing, R. A. & Panaud, O., 2006, In: Genome Research. 16, 10, p. 1262-1269 8 p.

    Research output: Contribution to journalArticlepeer-review

    411 Scopus citations
  • Erratum to "Utilization of a zebra finch BAC library to determine the structure of an avian androgen receptor genomic region" [Genomics 87 (2006) 181-190] (DOI:10.1016/j.ygeno.2005.09.005)

    Luo, M., Yu, Y., Kim, H. R., Kudrna, D., Itoh, Y., Agate, R. J., Melamed, E., Goicoechea, J. L., Talag, J., Mueller, C., Wang, W., Currie, J., Sisneros, N. B., Wing, R. A. & Arnold, A. P., May 2006, In: Genomics. 87, 5, p. 678-679 2 p.

    Research output: Contribution to journalComment/debatepeer-review

  • Genomic and genetic characterization of rice Cen3 reveals extensive transcription and evolutionary implications of a complex centromere

    Yan, H., Ito, H., Nobuta, K., Ouyang, S., Jin, W., Tian, S., Lu, C., Venu, R. C., Wang, G. L., Green, P. J., Wing, R. A., Buell, C. R., Meyers, B. C. & Jiang, J., Sep 2006, In: Plant Cell. 18, 9, p. 2123-2133 11 p.

    Research output: Contribution to journalArticlepeer-review

    81 Scopus citations
  • Integration of hybridization-based markers (overgos) into physical maps for comparative and evolutionary explorations in the genus Oryza and in Sorghum

    Hass-Jacobus, B. L., Futrell-Griggs, M., Abernathy, B., Westerman, R., Goicoechea, J. L., Stein, J., Klein, P., Hurwitz, B., Zhou, B., Rakhshan, F., Sanyal, A., Gill, N., Lin, J. Y., Walling, J. G., Luo, M. Z., Ammiraju, J. S. S., Kudrna, D., Kim, H. R., Ware, D., Wing, R. A. & 2 others, San Miguel, P. & Jackson, S. A., Aug 8 2006, In: BMC genomics. 7, 199.

    Research output: Contribution to journalArticlepeer-review

    13 Scopus citations
  • MGOS: A resource for studying Magnaporthe grisea and Oryza sativa interactions

    Soderlund, C., Haller, K., Pampanwar, V., Ebbole, D., Farman, M., Orbach, M. J., Wang, G. L., Wing, R., Xu, J. R., Brown, D., Mitchell, T. & Dean, R., Oct 2006, In: Molecular Plant-Microbe Interactions. 19, 10, p. 1055-1061 7 p.

    Research output: Contribution to journalArticlepeer-review

    20 Scopus citations
  • New resources for marine genomics: Bacterial artificial chromosome libraries for the eastern and pacific oysters (Crassostrea virginica and C. gigas)

    Cunningham, C., Hikima, J. I., Jenny, M. J., Chapman, R. W., Fang, G. C., Saski, C., Lundqvist, M. L., Wing, R. A., Cupit, P. M., Gross, P. S., Warr, G. W. & Tomkins, J. P., Oct 2006, In: Marine Biotechnology. 8, 5, p. 521-533 13 p.

    Research output: Contribution to journalArticlepeer-review

    46 Scopus citations
  • Single nucleotide polymorphisms and insertion-deletions for genetic markers and anchoring the maize fingerprint contig physical map

    Vroh Bi, I., McMullen, M. D., Sanchez-Villeda, H., Schroeder, S., Gardiner, J., Polacco, M., Soderlund, C., Wing, R., Fang, Z. & Coe, E. H., Jan 2006, In: Crop Science. 46, 1, p. 12-21 10 p.

    Research output: Contribution to journalArticlepeer-review

    57 Scopus citations
  • The Oryza bacterial artificial chromosome library resource: Construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza

    Ammiraju, J. S. S., Luo, M., Goicoechea, J. L., Wang, W., Kudrna, D., Mueller, C., Talag, J., Kim, H. R., Sisneros, N. B., Blackmon, B., Fang, E., Tomkins, J. B., Brar, D., MacKill, D., McCouch, S., Kurata, N., Lambert, G., Galbraith, D. W., Arumuganathan, K., Rao, K. & 7 others, Walling, J. G., Gill, N., Yu, Y., SanMiguel, P., Soderlund, C., Jackson, S. & Wing, R. A., Jan 2006, In: Genome Research. 16, 1, p. 140-147 8 p.

    Research output: Contribution to journalArticlepeer-review

    177 Scopus citations
  • Two highly representative rice BAC libraries of japonica cv Tainung 67 suitable for rice structural and functional genomic research

    Lin, Y. R., Chow, T. Y., Luo, M., Kudrna, D., Lin, C. C., Wing, R. A. & Hsing, Y. I. C., Apr 2006, In: Plant Science. 170, 4, p. 889-896 8 p.

    Research output: Contribution to journalArticlepeer-review

  • Uneven chromosome contraction and expansion in the maize genome

    Bruggmann, R., Bharti, A. K., Gundlach, H., Lai, J., Young, S., Pontaroli, A. C., Wei, F., Haberer, G., Fuks, G., Du, C., Raymond, C., Estep, M. C., Liu, R., Bennetzen, J. L., Chan, A. P., Rabinowicz, P. D., Quackenbush, J., Barbazuk, W. B., Wing, R. A., Birren, B. & 4 others, Nusbaum, C., Rounsley, S., Mayer, K. F. X. & Messing, J., 2006, In: Genome Research. 16, 10, p. 1241-1251 11 p.

    Research output: Contribution to journalArticlepeer-review

    95 Scopus citations
  • Utilization of a zebra finch BAC library to determine the structure of an avian androgen receptor genomic region

    Luo, M., Yu, Y., Kim, H., Kudrna, D., Itoh, Y., Agate, R. J., Melamed, E., Goicoechea, J. L., Talag, J., Mueller, C., Wang, W., Currie, J., Sisneros, N. B., Wing, R. A. & Arnold, A. P., Jan 2006, In: Genomics. 87, 1, p. 181-190 10 p.

    Research output: Contribution to journalArticlepeer-review

    24 Scopus citations
  • 2005

    Candidate gene database and transcript map for peach, a model species for fruit trees

    Horn, R., Lecouls, A. C., Callahan, A., Dandekar, A., Garay, L., McCord, P., Howad, W., Chan, H., Verde, I., Main, D., Jung, S., Georgi, L., Forrest, S., Mook, J., Zhebentyayeva, T., Yu, Y., Hye, R. K., Jesudurai, C., Sosinski, B., Arús, P. & 7 others, Baird, V., Parfitt, D., Reighard, G., Scorza, R., Tomkins, J., Wing, R. & Abbott, A. G., May 2005, In: Theoretical and Applied Genetics. 110, 8, p. 1419-1428 10 p.

    Research output: Contribution to journalArticlepeer-review

    67 Scopus citations
  • Comparative physical mapping links conservation of microsynteny to chromosome structure and recombination in grasses

    Bowers, J. E., Arias, M. A., Asher, R., Avise, J. A., Ball, R. T., Brewer, G. A., Buss, R. W., Chen, A. H., Edwards, T. M., Estill, J. C., Exum, H. E., Goff, V. H., Herrick, K. L., Steele, C. L. J., Karunakaran, S., Lafayette, G. K., Lemke, C., Marler, B. S., Masters, S. L., McMillan, J. M. & 13 others, Nelson, L. K., Newsome, G. A., Nwakanma, C. C., Odeh, R. N., Phelps, C. A., Rarick, E. A., Rogers, C. J., Ryan, S. P., Slaughter, K. A., Soderlund, C. A., Tang, H., Wing, R. A. & Paterson, A. H., Sep 13 2005, In: Proceedings of the National Academy of Sciences of the United States of America. 102, 37, p. 13206-13211 6 p.

    Research output: Contribution to journalArticlepeer-review

    118 Scopus citations
  • Construction of a bacterial artificial chromosome library from the spikemoss Selaginella moellendorffii: A new resource for plant comparative genomics

    Wang, W., Tanurdzic, M., Luo, M., Sisneros, N., Hye, R. K., Weng, J. K., Kudrna, D., Mueller, C., Arumuganathan, K., Carlson, J., Chapple, C., De Pamphilis, C., Mandoli, D., Tomkins, J., Wing, R. A. & Banks, J. A., Jun 14 2005, In: BMC Plant Biology. 5, 10.

    Research output: Contribution to journalArticlepeer-review

    51 Scopus citations
  • Efficient insertional mutagenesis in rice using the maize En/Spm elements

    Kumar, C. S., Wing, R. A. & Sundaresan, V., Dec 2005, In: Plant Journal. 44, 5, p. 879-892 14 p.

    Research output: Contribution to journalArticlepeer-review

    82 Scopus citations
  • In-depth sequence analysis of the tomato chromosome 12 centromeric region: Identification of a large CAA block and characterization of pericentromere retrotranposons

    Yang, T. J., Lee, S., Chang, S. B., Yu, Y., de Jong, H. & Wing, R. A., Jul 2005, In: Chromosoma. 114, 2, p. 103-117 15 p.

    Research output: Contribution to journalArticlepeer-review

    44 Scopus citations
  • Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction

    Jantasuriyarat, C., Gowda, M., Haller, K., Hatfield, J., Lu, G., Stahlberg, E., Zhou, B., Li, H., Kim, H. R., Yu, Y., Dean, R. A., Wing, R. A., Soderlund, C. & Wang, G. L., 2005, In: Plant physiology. 138, 1, p. 105-115 11 p.

    Research output: Contribution to journalArticlepeer-review

    79 Scopus citations
  • Plant Molecular Biology: Editorial

    Wing, R., Sep 2005, In: Plant Molecular Biology. 59, 1, p. vii

    Research output: Contribution to journalEditorialpeer-review

  • Random sheared fosmid library as a new genomic tool to accelerate complete finishing of rice (Oryza sativa spp. Nipponbare) genome sequence: Sequencing of gap-specific fosmid clones uncovers new euchromatic portions of the genome

    Ammiraju, J. S. S., Yu, Y., Luo, M., Kudrna, D., Kim, H. R., Goicoechea, J. L., Katayose, Y., Matsumoto, T., Wu, J., Sasaki, T. & Wing, R. A., Nov 2005, In: Theoretical and Applied Genetics. 111, 8, p. 1596-1607 12 p.

    Research output: Contribution to journalArticlepeer-review

    30 Scopus citations
  • Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species. The Rice Chromosome 3 Sequencing Consortium

    Buell, C. R., McCombie, W. R., Wing, R. A., Yuan, Q., Ouyang, S., Liu, J., Zhu, W., Wang, A., Maiti, R., Haas, B., Wortman, J., Pertea, M., Jones, K. M., Kim, M., Overton, L., Tsitrin, T., Fadrosh, D., Bera, J., Weaver, J., Jin, S. & 56 others, Johri, S., Reardon, M., Webb, K., Hill, J., Moffat, K., Tallon, L., Van Aken, S., Lewis, M., Utterback, T., Feldblyum, T., Zismann, V., Iobst, S., Hsiao, J., De Vazeille, A. R., Salzberg, S. L., White, O., Fraser, C., Yu, Y., Kim, H. R., Rambo, T., Currie, J., Collura, K., Kernodle-Thompson, S., Wei, F., Kudrna, D., Ammiraju, J. S. S., Luo, M., Goicoechea, J. L., Henry, D., Oates, R., Palmer, M., Pries, G., Saski, C., Simmons, J., Soderlund, C., Soderlund, C., Soderlund, C., Nelson, W., Soderlund, C., De La Bastide, M., Spiegel, L., Nascimento, L., Huang, E., Preston, R., Zutavern, T., Palmer, L., O'haughnessy, A., Dike, S., McCombie, W. R., Minx, P., Cordum, H., Wilson, R., Jin, W., Lee, H. R., Jiang, J. & Jackson, S., Sep 1 2005, In: Genome Research. 15, 9, p. 1284-1291 8 p.

    Research output: Contribution to journalArticlepeer-review

    57 Scopus citations
  • Sorghum expressed sequence tags identify signature genes for drought, pathogenesis, and skotomorphogenesis from a milestone set of 16,801 unique transcripts

    Pratt, L. H., Liang, C., Shah, M., Sun, F., Wang, H., Reid, S. P., Gingle, A. R., Paterson, A. H., Wing, R., Dean, R., Klein, R., Nguyen, H. T., Ma, H. M., Zhao, X., Morishige, D. T., Mullet, J. E. & Cordonnier-Pratt, M. M., 2005, In: Plant physiology. 139, 2, p. 869-884 16 p.

    Research output: Contribution to journalArticlepeer-review

    57 Scopus citations
  • Structure and architecture of the maize genome

    Haberer, G., Young, S., Bharti, A. K., Gundlach, H., Raymond, C., Fuks, G., Butler, E., Wing, R. A., Rounsley, S., Birren, B., Nusbaum, C., Mayer, K. F. X. & Messing, J., 2005, In: Plant physiology. 139, 4, p. 1612-1624 13 p.

    Research output: Contribution to journalArticlepeer-review

    115 Scopus citations
  • The map-based sequence of the rice genome

    Matsumoto, T., Wu, J., Kanamori, H., Katayose, Y., Fujisawa, M., Namiki, N., Mizuno, H., Yamamoto, K., Antonio, B. A., Baba, T., Sakata, K., Nagamura, Y., Aoki, H., Arikawa, K., Arita, K., Bito, T., Chiden, Y., Fujitsuka, N., Fukunaka, R., Hamada, M. & 243 others, Harada, C., Hayashi, A., Hijishita, S., Honda, M., Hosokawa, S., Ichikawa, Y., Idonuma, A., Iijima, M., Ikeda, M., Ikeno, M., Ito, K., Ito, S., Ito, T., Ito, Y., Ito, Y., Iwabuchi, A., Kamiya, K., Karasawa, W., Kurita, K., Katagiri, S., Kikuta, A., Kobayashi, H., Kobayashi, N., MacHita, K., Maehara, T., Masukawa, M., Mizubayashi, T., Mukai, Y., Nagasaki, H., Nagata, Y., Naito, S., Nakashima, M., Nakama, Y., Nakamichi, Y., Nakamura, M., Meguro, A., Negishi, M., Ohta, I., Ohta, T., Okamoto, M., Ono, N., Saji, S., Sakaguchi, M., Sakai, K., Shibata, M., Shimokawa, T., Song, J., Takazaki, Y., Terasawa, K., Tsugane, M., Tsuji, K., Ueda, S., Waki, K., Yamagata, H., Yamamoto, M., Yamamoto, S., Yamane, H., Yoshiki, S., Yoshihara, R., Yukawa, K., Zhong, H., Yano, M., Sasaki, T., Yuan, Q., Ouyang, S., Liu, J., Jones, K. M., Gansberger, K., Moffat, K., Hill, J., Bera, J., Fadrosh, D., Jin, S., Johri, S., Kim, M., Overton, L., Reardon, M., Tsitrin, T., Vuong, H., Weaver, B., Ciecko, A., Tallon, L., Jackson, J., Pai, G., Van Aken, S., Utterback, T., Reidmuller, S., Feldblyum, T., Hsiao, J., Zismann, V., Iobst, S., De Vazeille, A. R., Buell, C. R., Ying, K., Li, Y., Lu, T., Huang, Y., Zhao, Q., Feng, Q., Zhang, L., Zhu, J., Weng, Q., Mu, J., Lu, Y., Fan, D., Liu, Y., Guan, J., Zhang, Y., Yu, S., Liu, X., Zhang, Y., Hong, G., Han, B., Choisne, N., Demange, N., Orjeda, G., Samain, S., Cattolico, L., Pelletier, E., Couloux, A., Segurens, B., Wincker, P., D'Hont, A., Scarpelli, C., Weissenbach, J., Salanoubat, M., Quetier, F., Yu, Y., Kim, H. R., Rambo, T., Currie, J., Collura, K., Luo, M., Yang, T. J., Ammiraju, J. S. S., Engler, F., Soderlund, C., Wing, R. A., Palmer, L. E., De La Bastide, M., Spiegel, L., Nascimento, L., Zutavern, T., O'Shaughnessy, A., Dike, S., Dedhia, N., Preston, R., Balija, V., McCombie, W. R., Chow, T. Y., Chen, H. H., Chung, M. C., Chen, C. S., Shaw, J. F., Wu, H. P., Hsiao, K. J., Chao, Y. T., Chu, M. K., Cheng, C. H., Hour, A. L., Lee, P. F., Lin, S. J., Lin, Y. C., Liou, J. Y., Liu, S. M., Hsing, Y. I., Raghuvanshi, S., Mohanty, A., Bharti, A. K., Gaur, A., Gupta, V., Kumar, D., Ravi, V., Vij, S., Kapur, A., Khurana, P., Khurana, P., Khurana, J. P., Tyagi, A. K., Gaikwad, K., Singh, A., Dalal, V., Srivastava, S., Dixit, A., Pal, A. K., Ghazi, I. A., Yadav, M., Pandit, A., Bhargava, A., Sureshbabu, K., Batra, K., Sharma, T. R., Mohapatra, T., Singh, N. K., Messing, J., Nelson, A. B., Fuks, G., Kavchok, S., Keizer, G., Llaca, E. L. V., Song, R., Tanyolac, B., Young, S., Ho, K., Hahn, J. H., Sangsakoo, G., Vanavichit, A., De Mattos, L. A. T., Zimmer, P. D., Malone, G., Dellagostin, O., De Oliveira, A. C., Bevan, M., Bancroft, I., Minx, P., Cordum, H., Wilson, R., Cheng, Z., Jin, W., Jiang, J., Leong, S. A., Iwama, H., Gojobori, T., Itoh, T., Niimura, Y., Fujii, Y., Habara, T., Sakai, H., Sato, Y., Wilson, G., Kumar, K., McCouch, S., Juretic, N., Hoen, D., Wright, S., Bruskiewich, R., Bureau, T., Miyao, A., Hirochika, H., Nishikawa, T., Kadowaki, K. I., Sugiura, M. & Burr, B., Aug 11 2005, In: Nature. 436, 7052, p. 793-800 8 p.

    Research output: Contribution to journalArticlepeer-review

    2890 Scopus citations
  • The Oryza map alignment project: The golden path to unlocking the genetic potential of wild rice species

    Wing, R. A., Ammiraju, J. S. S., Luo, M., Kim, H. R., Yu, Y., Kudrna, D., Goicoechea, J. L., Wang, W., Nelson, W., Rao, K., Brar, D., Mackill, D. J., Han, B., Soderlund, C., Stein, L., SanMiguel, P. & Jackson, S., Sep 2005, In: Plant Molecular Biology. 59, 1, p. 53-62 10 p.

    Research output: Contribution to journalArticlepeer-review

    127 Scopus citations
  • The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications

    Choisne, N., Demange, N., Orjeda, G., Samain, S., D'Hont, A., Cattolico, L., Pelletier, E., Couloux, A., Segurens, B., Wincker, P., Scarpelli, C., Weissenbach, J., Salanoubat, M., Singh, N. K., Mohapatra, T., Sharma, T. R., Gaikwad, K., Singh, A., Dalal, V., Srivastava, S. K. & 79 others, Dixit, A., Pal, A. K., Ghazi, I. A., Yadav, M., Pandit, A., Bhargava, A., Sureshbabu, K., Dixit, R., Singh, H., Swain, S. C., Pal, S., Ragiba, M., Singh, P. K., Singhal, V., Mendiratta, S. D., Batra, K., Raghuvanshi, S., Mohanty, A., Bharti, A. K., Gaur, A., Gupta, V., Kumar, D., Vydianathan, R., Vij, S., Kapur, A., Khurana, P., Sharma, S., Khurana, P., Khurana, J. P., Tyagi, A. K., Yuan, Q., Ouyang, S., Liu, J., Zhu, W., Wang, A., Lin, H., Hamilton, J., Haas, B., Wortman, J., Jones, K. M., Kim, M., Overton, L., Tsitrin, T., Fadrosh, D., Bera, J., Weaver, B., Jin, S., Johri, S., Reardon, M., Vuong, H., Tallon, L., Van Aken, S., Lewis, M., Utterback, T., Feldblyum, T., Zismann, V., Iobst, S., Hsiao, J., de Vazeille, A. R., Salzberg, S. L., White, O., Fraser, C., Buell, C. R., Yu, Y., Rambo, T., Currie, J., Collura, K., Kim, H. R., Stum, D., Wang, W., Kudrna, D., Mueller, C., Wing, R. A., Kramer, M., Spiegel, L., Nascimento, L., Preston, R., Zutavern, T. & Messing, J., Sep 27 2005, In: BMC biology. 3, 20.

    Research output: Contribution to journalArticlepeer-review

    148 Scopus citations
  • Toward closing rice telomere gaps: Mapping and sequence characterization of rice subtelomere regions

    Yang, T. J., Yu, Y., Chang, S. B., De Jong, H., Oh, C. S., Ahn, S. N., Fang, E. & Wing, R. A., Aug 2005, In: Theoretical and Applied Genetics. 111, 3, p. 467-478 12 p.

    Research output: Contribution to journalArticlepeer-review

    19 Scopus citations