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Additional file 5: Table S4. of The impact and origin of copy number variations in the Oryza species
Bai, Z. (Contributor), Chen, J. (Contributor), Liao, Y. (Creator), Wang, M. (Contributor), Liu, R. (Creator), Ge, S. (Creator), Wing, R. A. (Creator) & Chen, M. (Contributor), figshare, 2016
DOI: 10.6084/m9.figshare.c.3597560_d7, https://figshare.com/articles/Additional_file_5_Table_S4_of_The_impact_and_origin_of_copy_number_variations_in_the_Oryza_species/4322591
Dataset
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Additional file 1: Table S1. of The impact and origin of copy number variations in the Oryza species
Bai, Z. (Contributor), Chen, J. (Contributor), Liao, Y. (Creator), Wang, M. (Contributor), Liu, R. (Creator), Ge, S. (Creator), Wing, R. A. (Creator) & Chen, M. (Contributor), figshare, 2016
DOI: 10.6084/m9.figshare.c.3597560_d8.v1, https://springernature.figshare.com/articles/dataset/Additional_file_1_Table_S1_of_The_impact_and_origin_of_copy_number_variations_in_the_Oryza_species/4322600/1
Dataset
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Additional file 6: Table S5. of The impact and origin of copy number variations in the Oryza species
Bai, Z. (Contributor), Chen, J. (Contributor), Liao, Y. (Creator), Wang, M. (Contributor), Liu, R. (Creator), Ge, S. (Creator), Wing, R. A. (Creator) & Chen, M. (Contributor), figshare, 2016
DOI: 10.6084/m9.figshare.c.3597560_d9, https://figshare.com/articles/Additional_file_6_Table_S5_of_The_impact_and_origin_of_copy_number_variations_in_the_Oryza_species/4322612
Dataset
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Additional file 7: Table S6. of The impact and origin of copy number variations in the Oryza species
Bai, Z. (Contributor), Chen, J. (Contributor), Liao, Y. (Creator), Wang, M. (Contributor), Liu, R. (Creator), Ge, S. (Creator), Wing, R. A. (Creator) & Chen, M. (Contributor), figshare, 2016
DOI: 10.6084/m9.figshare.c.3597560_d2, https://figshare.com/articles/Additional_file_7_Table_S6_of_The_impact_and_origin_of_copy_number_variations_in_the_Oryza_species/4322492
Dataset
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MOESM6 of Genome sequence of the model rice variety KitaakeX
Jain, R. (Creator), Jenkins, J. (Creator), Shu, S. (Contributor), Chern, M. (Contributor), Martin, J. A. (Creator), Copetti, D. (Creator), Duong, P. Q. (Creator), Pham, N. T. (Creator), Kudrna, D. A. (Creator), Talag, J. (Creator), Schackwitz, W. S. (Creator), Lipzen, A. M. (Creator), Dilworth, D. (Creator), Bauer, D. (Creator), Grimwood, J. (Creator), Nelson, C. R. (Creator), Xing, F. (Creator), Xie, W. (Contributor), Barry, K. W. (Creator), Wing, R. A. (Creator), Schmutz, J. (Creator), Li, G. (Contributor) & Ronald, P. C. (Creator), figshare, 2019
DOI: 10.6084/m9.figshare.11293562.v1, https://springernature.figshare.com/articles/MOESM6_of_Genome_sequence_of_the_model_rice_variety_KitaakeX/11293562/1
Dataset
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MOESM10 of Genome sequence of the model rice variety KitaakeX
Jain, R. (Creator), Jenkins, J. (Creator), Shu, S. (Contributor), Chern, M. (Contributor), Martin, J. A. (Creator), Copetti, D. (Creator), Duong, P. Q. (Creator), Pham, N. T. (Creator), Kudrna, D. A. (Creator), Talag, J. (Creator), Schackwitz, W. S. (Creator), Lipzen, A. M. (Creator), Dilworth, D. (Creator), Bauer, D. (Creator), Grimwood, J. (Creator), Nelson, C. R. (Creator), Xing, F. (Creator), Xie, W. (Contributor), Barry, K. W. (Creator), Wing, R. A. (Creator), Schmutz, J. (Creator), Li, G. (Contributor) & Ronald, P. C. (Creator), figshare, 2019
DOI: 10.6084/m9.figshare.11293511.v1, https://springernature.figshare.com/articles/MOESM10_of_Genome_sequence_of_the_model_rice_variety_KitaakeX/11293511/1
Dataset
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Data from: Disentangling methodological and biological sources of gene tree discordance on Oryza (Poaceae) chromosome 3
Zwickl, D. J. (Contributor), Stein, J. C. (Contributor), Wing, R. A. (Contributor), Ware, D. (Contributor) & Sanderson, M. J. (Contributor), ZENODO, 2014
DOI: 10.5061/dryad.6169b, https://zenodo.org/record/4995303
Dataset
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Transposable Element Prediction of of Twelve Platinum-Standard Reference Genomes Sequences
Zhou, Y. (Creator), Chebotarov, D. (Creator), Kudrna, D. (Creator), Llaca, V. (Creator), Lee, S. (Contributor), Rajasekar, S. (Creator), Mohammed, N. (Creator), Al-Bader, N. (Creator), Sobel-Sorenson, C. (Creator), Parakkal, P. (Contributor), Arbelaez, L. J. (Contributor), Franco, N. (Creator), Alexandrov, N. (Contributor), Hamilton, N. R. S. (Contributor), Leung, H. (Creator), Mauleon, R. (Creator), Lorieux, M. (Creator), Zuccolo, A. (Creator), McNally, K. (Creator), Zhang, J. (Contributor) & Wing, R. A. (Creator), figshare, 2020
DOI: 10.6084/m9.figshare.11600535, https://springernature.figshare.com/articles/Transposable_Element_Prediction_of_of_Twelve_Platinum-Standard_Reference_Genomes_Sequences/11600535
Dataset
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The impact and origin of copy number variations in the Oryza species
Bai, Z. (Contributor), Chen, J. (Contributor), Liao, Y. (Creator), Wang, M. (Contributor), Liu, R. (Creator), Ge, S. (Creator), Wing, R. A. (Creator) & Chen, M. (Contributor), figshare, 2016
DOI: 10.6084/m9.figshare.c.3597560.v1, https://figshare.com/collections/The_impact_and_origin_of_copy_number_variations_in_the_Oryza_species/3597560/1
Dataset
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A platinum standard pan-genome resource that represents the population structure of Asian rice
Zhou, Y. (Creator), Chebotarov, D. (Creator), Kudrna, D. (Creator), Llaca, V. (Creator), Lee, S. (Contributor), Rajasekar, S. (Creator), Mohammed, N. (Creator), Al-Bader, N. (Creator), Sobel-Sorenson, C. (Creator), Parakkal, P. (Contributor), Arbelaez, L. J. (Contributor), Franco, N. (Creator), Alexandrov, N. (Contributor), Hamilton, N. R. S. (Contributor), Leung, H. (Creator), Mauleon, R. (Creator), Lorieux, M. (Creator), Zuccolo, A. (Creator), McNally, K. (Creator), Zhang, J. (Contributor) & Wing, R. A. (Creator), figshare, 2020
DOI: 10.6084/m9.figshare.c.4816266.v1, https://springernature.figshare.com/collections/A_platinum_standard_pan-genome_resource_that_represents_the_population_structure_of_Asian_rice/4816266/1
Dataset
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Metadata record for: A platinum standard pan-genome resource that represents the population structure of Asian rice
Zhou, Y. (Contributor), Chebotarov, D. (Contributor), Kudrna, D. (Contributor), Llaca, V. (Contributor), Lee, S. (Contributor), Rajasekar, S. (Contributor), Mohammed, N. (Contributor), Al-Bader, N. (Contributor), Sobel-Sorenson, C. (Contributor), Parakkal, P. (Contributor), Arbelaez, L. J. (Contributor), Franco, N. (Contributor), Alexandrov, N. (Contributor), Hamilton, N. R. S. (Contributor), Leung, H. (Contributor), Mauleon, R. (Contributor), Lorieux, M. (Contributor), Zuccolo, A. (Contributor), McNally, K. (Contributor), Zhang, J. (Contributor) & Wing, R. A. (Contributor), figshare, 2020
DOI: 10.6084/m9.figshare.11950596.v1, https://springernature.figshare.com/articles/Metadata_record_for_A_platinum_standard_pan-genome_resource_that_represents_the_population_structure_of_Asian_rice/11950596/1
Dataset
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Additional file 4 of Gene fusion as an important mechanism to generate new genes in the genus Oryza
Zhou, Y. (Creator), Zhang, C. (Creator), Zhang, L. (Creator), Ye, Q. (Creator), Liu, N. (Creator), Wang, M. (Creator), Long, G. (Creator), Fan, W. (Creator), Long, M. (Creator) & Wing, R. A. (Creator), figshare, 2022
DOI: 10.6084/m9.figshare.20081162.v1, https://springernature.figshare.com/articles/dataset/Additional_file_4_of_Gene_fusion_as_an_important_mechanism_to_generate_new_genes_in_the_genus_Oryza/20081162/1
Dataset
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Data from: Genetic control of seed shattering during African rice domestication
Lv, S. (Contributor), Wu, W. (Contributor), Wang, M. (Contributor), Meyer, R. S. (Contributor), Ndjiondjop, M. (Contributor), Tan, L. (Contributor), Zhou, H. (Contributor), Zhang, J. (Contributor), Fu, Y. (Contributor), Cai, H. (Contributor), Sun, C. (Contributor), Wing, R. A. (Contributor) & Zhu, Z. (Contributor), ZENODO, 2019
DOI: 10.5061/dryad.qh5r649, https://zenodo.org/record/4980182
Dataset
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Additional file 2: Table S2. of The impact and origin of copy number variations in the Oryza species
Bai, Z. (Contributor), Chen, J. (Contributor), Liao, Y. (Creator), Wang, M. (Contributor), Liu, R. (Creator), Ge, S. (Creator), Wing, R. A. (Creator) & Chen, M. (Contributor), figshare, 2016
DOI: 10.6084/m9.figshare.c.3597560_d4, https://figshare.com/articles/Additional_file_2_Table_S2_of_The_impact_and_origin_of_copy_number_variations_in_the_Oryza_species/4322531
Dataset
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Additional file 6: Table S5. of The impact and origin of copy number variations in the Oryza species
Bai, Z. (Contributor), Chen, J. (Contributor), Liao, Y. (Creator), Wang, M. (Contributor), Liu, R. (Creator), Ge, S. (Creator), Wing, R. A. (Creator) & Chen, M. (Contributor), figshare, 2016
DOI: 10.6084/m9.figshare.c.3597560_d9.v1, https://springernature.figshare.com/articles/dataset/Additional_file_6_Table_S5_of_The_impact_and_origin_of_copy_number_variations_in_the_Oryza_species/4322612/1
Dataset
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Additional file 3: Table S3. of The impact and origin of copy number variations in the Oryza species
Bai, Z. (Contributor), Chen, J. (Contributor), Liao, Y. (Creator), Wang, M. (Contributor), Liu, R. (Creator), Ge, S. (Creator), Wing, R. A. (Creator) & Chen, M. (Contributor), figshare, 2016
DOI: 10.6084/m9.figshare.c.3597560_d3.v1, https://springernature.figshare.com/articles/dataset/Additional_file_3_Table_S3_of_The_impact_and_origin_of_copy_number_variations_in_the_Oryza_species/4322510/1
Dataset
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Exceptional lability of a genomic complex in rice and its close relatives revealed by interspecific and intraspecific comparison and population analysis
Tian, Z. (Contributor), Yu, Y. (Contributor), Lin, F. (Creator), Yu, Y. (Contributor), SanMiguel, P. J. (Creator), Wing, R. A. (Creator), McCouch, S. R. (Creator), Ma, J. (Contributor) & Jackson, S. A. (Creator), figshare, 2020
DOI: 10.6084/m9.figshare.c.4845903.v1, https://springernature.figshare.com/collections/Exceptional_lability_of_a_genomic_complex_in_rice_and_its_close_relatives_revealed_by_interspecific_and_intraspecific_comparison_and_population_analysis/4845903/1
Dataset
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MOESM11 of Genome sequence of the model rice variety KitaakeX
Jain, R. (Creator), Jenkins, J. (Creator), Shu, S. (Contributor), Chern, M. (Contributor), Martin, J. A. (Creator), Copetti, D. (Creator), Duong, P. Q. (Creator), Pham, N. T. (Creator), Kudrna, D. A. (Creator), Talag, J. (Creator), Schackwitz, W. S. (Creator), Lipzen, A. M. (Creator), Dilworth, D. (Creator), Bauer, D. (Creator), Grimwood, J. (Creator), Nelson, C. R. (Creator), Xing, F. (Creator), Xie, W. (Contributor), Barry, K. W. (Creator), Wing, R. A. (Creator), Schmutz, J. (Creator), Li, G. (Contributor) & Ronald, P. C. (Creator), figshare, 2019
DOI: 10.6084/m9.figshare.11293520.v1, https://springernature.figshare.com/articles/MOESM11_of_Genome_sequence_of_the_model_rice_variety_KitaakeX/11293520/1
Dataset
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Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries
Paiva, J. A. P. (Creator), Prat, E. (Creator), Vautrin, S. (Creator), Santos, M. D. (Creator), San-Clemente, H. (Creator), Brommonschenkel, S. (Creator), Fonseca, P. G. S. (Creator), Grattapaglia, D. (Creator), Song, X. (Creator), Ammiraju, J. S. S. (Creator), Kudrna, D. (Creator), Wing, R. A. (Creator), Freitas, A. T. (Creator), Bergès, H. (Creator) & Grima-Pettenati, J. (Creator), figshare, 2020
DOI: 10.6084/m9.figshare.c.4845366.v1, https://springernature.figshare.com/collections/Advancing_Eucalyptus_genomics_identification_and_sequencing_of_lignin_biosynthesis_genes_from_deep-coverage_BAC_libraries/4845366/1
Dataset
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Data from: The rice paradox: multiple origins but single domestication in Asian rice
Choi, J. Y. (Creator), Platts, A. E. (Creator), Fuller, D. Q. (Creator), Hsing, Y. (Creator), Wing, R. A. (Creator) & Purugganan, M. D. (Creator), Dryad, 2018
DOI: 10.5061/dryad.7cr0q, http://datadryad.org/stash/dataset/doi:10.5061/dryad.7cr0q
Dataset
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Data from: Phylogenomic analysis of BAC-end sequence libraries in Oryza (Poaceae)
Cranston, K. A. (Creator), Hurwitz, B. L. (Creator), Sanderson, M. J. (Creator), Ware, D. (Creator), Wing, R. A. (Creator) & Stein, L. (Creator), Dryad, 2010
DOI: 10.5061/dryad.1611, http://datadryad.org/stash/dataset/doi:10.5061/dryad.1611
Dataset
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Additional file 7 of Gene fusion as an important mechanism to generate new genes in the genus Oryza
Zhou, Y. (Creator), Zhang, C. (Creator), Zhang, L. (Creator), Ye, Q. (Creator), Liu, N. (Creator), Wang, M. (Creator), Long, G. (Creator), Fan, W. (Creator), Long, M. (Creator) & Wing, R. A. (Creator), figshare, 2022
DOI: 10.6084/m9.figshare.20081174.v1, https://springernature.figshare.com/articles/dataset/Additional_file_7_of_Gene_fusion_as_an_important_mechanism_to_generate_new_genes_in_the_genus_Oryza/20081174/1
Dataset
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MOESM8 of Genome sequence of the model rice variety KitaakeX
Jain, R. (Creator), Jenkins, J. (Creator), Shu, S. (Contributor), Chern, M. (Contributor), Martin, J. A. (Creator), Copetti, D. (Creator), Duong, P. Q. (Creator), Pham, N. T. (Creator), Kudrna, D. A. (Creator), Talag, J. (Creator), Schackwitz, W. S. (Creator), Lipzen, A. M. (Creator), Dilworth, D. (Creator), Bauer, D. (Creator), Grimwood, J. (Creator), Nelson, C. R. (Creator), Xing, F. (Creator), Xie, W. (Contributor), Barry, K. W. (Creator), Wing, R. A. (Creator), Schmutz, J. (Creator), Li, G. (Contributor) & Ronald, P. C. (Creator), figshare, 2019
DOI: 10.6084/m9.figshare.11293568.v1, https://springernature.figshare.com/articles/MOESM8_of_Genome_sequence_of_the_model_rice_variety_KitaakeX/11293568/1
Dataset
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Additional file 9: Table S8. of The impact and origin of copy number variations in the Oryza species
Bai, Z. (Contributor), Chen, J. (Contributor), Liao, Y. (Creator), Wang, M. (Contributor), Liu, R. (Creator), Ge, S. (Creator), Wing, R. A. (Creator) & Chen, M. (Contributor), figshare, 2016
DOI: 10.6084/m9.figshare.c.3597560_d6, https://figshare.com/articles/Additional_file_9_Table_S8_of_The_impact_and_origin_of_copy_number_variations_in_the_Oryza_species/4322567
Dataset
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Data from: Disentangling methodological and biological sources of gene tree discordance on Oryza (Poaceae) chromosome 3
Zwickl, D. J. (Creator), Stein, J. C. (Creator), Wing, R. A. (Creator), Ware, D. (Creator) & Sanderson, M. J. (Creator), Dryad Digital Repository, 2014
DOI: 10.5061/dryad.6169b.1, https://datadryad.org/resource/doi:10.5061/dryad.6169b.1
Dataset