Datasets
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Search results
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Data from: Genetic control of seed shattering during African rice domestication
Lv, S. (Creator), Wu, W. (Creator), Wang, M. (Creator), Meyer, R. S. (Creator), Ndjiondjop, M. (Creator), Tan, L. (Creator), Zhou, H. (Creator), Zhang, J. (Creator), Fu, Y. (Creator), Cai, H. (Creator), Sun, C. (Creator), Wing, R. A. (Creator) & Zhu, Z. (Creator), Dryad, 2019
DOI: 10.5061/dryad.qh5r649, http://datadryad.org/stash/dataset/doi:10.5061/dryad.qh5r649
Dataset
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Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries
Paiva, J. A. P. (Creator), Prat, E. (Creator), Vautrin, S. (Creator), Santos, M. D. (Creator), San-Clemente, H. (Creator), Brommonschenkel, S. (Creator), Fonseca, P. G. S. (Creator), Grattapaglia, D. (Creator), Song, X. (Creator), Ammiraju, J. S. S. (Creator), Kudrna, D. (Creator), Wing, R. A. (Creator), Freitas, A. T. (Creator), Bergès, H. (Creator) & Grima-Pettenati, J. (Creator), figshare, 2020
DOI: 10.6084/m9.figshare.c.4845366.v1, https://springernature.figshare.com/collections/Advancing_Eucalyptus_genomics_identification_and_sequencing_of_lignin_biosynthesis_genes_from_deep-coverage_BAC_libraries/4845366/1
Dataset
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Gene fusion as an important mechanism to generate new genes in the genus Oryza
Zhou, Y. (Creator), Zhang, C. (Creator), Zhang, L. (Creator), Ye, Q. (Creator), Liu, N. (Creator), Wang, M. (Creator), Long, G. (Creator), Fan, W. (Creator), Long, M. (Creator) & Wing, R. A. (Creator), figshare, 2022
DOI: 10.6084/m9.figshare.c.6049844.v1, https://springernature.figshare.com/collections/Gene_fusion_as_an_important_mechanism_to_generate_new_genes_in_the_genus_Oryza/6049844/1
Dataset
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Data from: The rice paradox: multiple origins but single domestication in Asian rice
Choi, J. Y. (Creator), Platts, A. E. (Creator), Fuller, D. Q. (Creator), Hsing, Y. (Creator), Wing, R. A. (Creator) & Purugganan, M. D. (Creator), Dryad, 2018
DOI: 10.5061/dryad.7cr0q, http://datadryad.org/stash/dataset/doi:10.5061/dryad.7cr0q
Dataset
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Additional file 10 of Gene fusion as an important mechanism to generate new genes in the genus Oryza
Zhou, Y. (Creator), Zhang, C. (Creator), Zhang, L. (Creator), Ye, Q. (Creator), Liu, N. (Creator), Wang, M. (Creator), Long, G. (Creator), Fan, W. (Creator), Long, M. (Creator) & Wing, R. A. (Creator), figshare, 2022
DOI: 10.6084/m9.figshare.20081147.v1, https://springernature.figshare.com/articles/dataset/Additional_file_10_of_Gene_fusion_as_an_important_mechanism_to_generate_new_genes_in_the_genus_Oryza/20081147/1
Dataset
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Additional file 9: Table S8. of The impact and origin of copy number variations in the Oryza species
Bai, Z. (Contributor), Chen, J. (Contributor), Liao, Y. (Creator), Wang, M. (Contributor), Liu, R. (Creator), Ge, S. (Creator), Wing, R. A. (Creator) & Chen, M. (Contributor), figshare, 2016
DOI: 10.6084/m9.figshare.c.3597560_d6.v1, https://springernature.figshare.com/articles/dataset/Additional_file_9_Table_S8_of_The_impact_and_origin_of_copy_number_variations_in_the_Oryza_species/4322567/1
Dataset
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Additional file 8: Table S7. of The impact and origin of copy number variations in the Oryza species
Bai, Z. (Contributor), Chen, J. (Contributor), Liao, Y. (Creator), Wang, M. (Contributor), Liu, R. (Creator), Ge, S. (Creator), Wing, R. A. (Creator) & Chen, M. (Contributor), figshare, 2016
DOI: 10.6084/m9.figshare.c.3597560_d5.v1, https://springernature.figshare.com/articles/dataset/Additional_file_8_Table_S7_of_The_impact_and_origin_of_copy_number_variations_in_the_Oryza_species/4322549/1
Dataset
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DNA methylation changes facilitated evolution of genes derived from Mutator-like transposable elements
Wang, J. (Creator), Yu, Y. (Contributor), Tao, F. (Creator), Zhang, J. (Contributor), Copetti, D. (Creator), Kudrna, D. (Creator), Talag, J. (Creator), Lee, S. (Contributor), Wing, R. A. (Creator) & Fan, C. (Contributor), figshare, 2016
DOI: 10.6084/m9.figshare.c.3610295.v1, https://figshare.com/collections/DNA_methylation_changes_facilitated_evolution_of_genes_derived_from_Mutator-like_transposable_elements/3610295/1
Dataset
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MOESM10 of Genome sequence of the model rice variety KitaakeX
Jain, R. (Creator), Jenkins, J. (Creator), Shu, S. (Contributor), Chern, M. (Contributor), Martin, J. A. (Creator), Copetti, D. (Creator), Duong, P. Q. (Creator), Pham, N. T. (Creator), Kudrna, D. A. (Creator), Talag, J. (Creator), Schackwitz, W. S. (Creator), Lipzen, A. M. (Creator), Dilworth, D. (Creator), Bauer, D. (Creator), Grimwood, J. (Creator), Nelson, C. R. (Creator), Xing, F. (Creator), Xie, W. (Contributor), Barry, K. W. (Creator), Wing, R. A. (Creator), Schmutz, J. (Creator), Li, G. (Contributor) & Ronald, P. C. (Creator), figshare, 2019
DOI: 10.6084/m9.figshare.11293511.v1, https://springernature.figshare.com/articles/MOESM10_of_Genome_sequence_of_the_model_rice_variety_KitaakeX/11293511/1
Dataset
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Additional file 6: Table S5. of The impact and origin of copy number variations in the Oryza species
Bai, Z. (Contributor), Chen, J. (Contributor), Liao, Y. (Creator), Wang, M. (Contributor), Liu, R. (Creator), Ge, S. (Creator), Wing, R. A. (Creator) & Chen, M. (Contributor), figshare, 2016
DOI: 10.6084/m9.figshare.c.3597560_d9.v1, https://springernature.figshare.com/articles/dataset/Additional_file_6_Table_S5_of_The_impact_and_origin_of_copy_number_variations_in_the_Oryza_species/4322612/1
Dataset
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Oryza Sativa and Magnaporthe Grisea LongSAGE
Gowda, M. (Contributor), Li, H. (Contributor), Jantasuriyarat, C. (Contributor), Chen, S. (Contributor), Bellizzi, M. (Contributor), Pampanwar, V. (Contributor), Kim, H. (Contributor), Stahlberg, E. (Contributor), Wing, R. A. (Contributor) & Soderlund, C. (Contributor), ArrayExpress, 2004
https://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-1924
Dataset
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Transposable Element Prediction of of Twelve Platinum-Standard Reference Genomes Sequences
Zhou, Y. (Creator), Chebotarov, D. (Creator), Kudrna, D. (Creator), Llaca, V. (Creator), Lee, S. (Contributor), Rajasekar, S. (Creator), Mohammed, N. (Creator), Al-Bader, N. (Creator), Sobel-Sorenson, C. (Creator), Parakkal, P. (Contributor), Arbelaez, L. J. (Contributor), Franco, N. (Creator), Alexandrov, N. (Contributor), Hamilton, N. R. S. (Contributor), Leung, H. (Creator), Mauleon, R. (Creator), Lorieux, M. (Creator), Zuccolo, A. (Creator), McNally, K. (Creator), Zhang, J. (Contributor) & Wing, R. A. (Creator), figshare, 2020
DOI: 10.6084/m9.figshare.11600535.v1, https://springernature.figshare.com/articles/Transposable_Element_Prediction_of_of_Twelve_Platinum-Standard_Reference_Genomes_Sequences/11600535/1
Dataset
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Data from: The rice paradox: multiple origins but single domestication in Asian rice
Choi, J. Y. (Contributor), Platts, A. E. (Contributor), Fuller, D. Q. (Contributor), Hsing, Y. (Contributor), Wing, R. A. (Contributor) & Purugganan, M. D. (Contributor), ZENODO, 2018
DOI: 10.5061/dryad.7cr0q, https://zenodo.org/record/5024198
Dataset
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MOESM5 of Genome sequence of the model rice variety KitaakeX
Jain, R. (Creator), Jenkins, J. (Creator), Shu, S. (Contributor), Chern, M. (Contributor), Martin, J. A. (Creator), Copetti, D. (Creator), Duong, P. Q. (Creator), Pham, N. T. (Creator), Kudrna, D. A. (Creator), Talag, J. (Creator), Schackwitz, W. S. (Creator), Lipzen, A. M. (Creator), Dilworth, D. (Creator), Bauer, D. (Creator), Grimwood, J. (Creator), Nelson, C. R. (Creator), Xing, F. (Creator), Xie, W. (Contributor), Barry, K. W. (Creator), Wing, R. A. (Creator), Schmutz, J. (Creator), Li, G. (Contributor) & Ronald, P. C. (Creator), figshare, 2019
DOI: 10.6084/m9.figshare.11293553.v1, https://springernature.figshare.com/articles/MOESM5_of_Genome_sequence_of_the_model_rice_variety_KitaakeX/11293553/1
Dataset
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Additional file 9 of Gene fusion as an important mechanism to generate new genes in the genus Oryza
Zhou, Y. (Creator), Zhang, C. (Creator), Zhang, L. (Creator), Ye, Q. (Creator), Liu, N. (Creator), Wang, M. (Creator), Long, G. (Creator), Fan, W. (Creator), Long, M. (Creator) & Wing, R. A. (Creator), figshare, 2022
DOI: 10.6084/m9.figshare.20081180.v1, https://springernature.figshare.com/articles/dataset/Additional_file_9_of_Gene_fusion_as_an_important_mechanism_to_generate_new_genes_in_the_genus_Oryza/20081180/1
Dataset
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MOESM4 of Genome sequence of the model rice variety KitaakeX
Jain, R. (Creator), Jenkins, J. (Creator), Shu, S. (Contributor), Chern, M. (Contributor), Martin, J. A. (Creator), Copetti, D. (Creator), Duong, P. Q. (Creator), Pham, N. T. (Creator), Kudrna, D. A. (Creator), Talag, J. (Creator), Schackwitz, W. S. (Creator), Lipzen, A. M. (Creator), Dilworth, D. (Creator), Bauer, D. (Creator), Grimwood, J. (Creator), Nelson, C. R. (Creator), Xing, F. (Creator), Xie, W. (Contributor), Barry, K. W. (Creator), Wing, R. A. (Creator), Schmutz, J. (Creator), Li, G. (Contributor) & Ronald, P. C. (Creator), figshare, 2019
DOI: 10.6084/m9.figshare.11293547.v1, https://springernature.figshare.com/articles/MOESM4_of_Genome_sequence_of_the_model_rice_variety_KitaakeX/11293547/1
Dataset
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Additional file 5: Table S4. of The impact and origin of copy number variations in the Oryza species
Bai, Z. (Contributor), Chen, J. (Contributor), Liao, Y. (Creator), Wang, M. (Contributor), Liu, R. (Creator), Ge, S. (Creator), Wing, R. A. (Creator) & Chen, M. (Contributor), figshare, 2016
DOI: 10.6084/m9.figshare.c.3597560_d7.v1, https://springernature.figshare.com/articles/dataset/Additional_file_5_Table_S4_of_The_impact_and_origin_of_copy_number_variations_in_the_Oryza_species/4322591/1
Dataset
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MOESM6 of Genome sequence of the model rice variety KitaakeX
Jain, R. (Creator), Jenkins, J. (Creator), Shu, S. (Contributor), Chern, M. (Contributor), Martin, J. A. (Creator), Copetti, D. (Creator), Duong, P. Q. (Creator), Pham, N. T. (Creator), Kudrna, D. A. (Creator), Talag, J. (Creator), Schackwitz, W. S. (Creator), Lipzen, A. M. (Creator), Dilworth, D. (Creator), Bauer, D. (Creator), Grimwood, J. (Creator), Nelson, C. R. (Creator), Xing, F. (Creator), Xie, W. (Contributor), Barry, K. W. (Creator), Wing, R. A. (Creator), Schmutz, J. (Creator), Li, G. (Contributor) & Ronald, P. C. (Creator), figshare, 2019
DOI: 10.6084/m9.figshare.11293562.v1, https://springernature.figshare.com/articles/MOESM6_of_Genome_sequence_of_the_model_rice_variety_KitaakeX/11293562/1
Dataset
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Additional file 2 of Gene fusion as an important mechanism to generate new genes in the genus Oryza
Zhou, Y. (Creator), Zhang, C. (Creator), Zhang, L. (Creator), Ye, Q. (Creator), Liu, N. (Creator), Wang, M. (Creator), Long, G. (Creator), Fan, W. (Creator), Long, M. (Creator) & Wing, R. A. (Creator), figshare, 2022
DOI: 10.6084/m9.figshare.20081156.v1, https://springernature.figshare.com/articles/dataset/Additional_file_2_of_Gene_fusion_as_an_important_mechanism_to_generate_new_genes_in_the_genus_Oryza/20081156/1
Dataset
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Additional file 8 of Gene fusion as an important mechanism to generate new genes in the genus Oryza
Zhou, Y. (Creator), Zhang, C. (Creator), Zhang, L. (Creator), Ye, Q. (Creator), Liu, N. (Creator), Wang, M. (Creator), Long, G. (Creator), Fan, W. (Creator), Long, M. (Creator) & Wing, R. A. (Creator), figshare, 2022
DOI: 10.6084/m9.figshare.20081177.v1, https://springernature.figshare.com/articles/dataset/Additional_file_8_of_Gene_fusion_as_an_important_mechanism_to_generate_new_genes_in_the_genus_Oryza/20081177/1
Dataset
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Additional file 7: Table S6. of The impact and origin of copy number variations in the Oryza species
Bai, Z. (Contributor), Chen, J. (Contributor), Liao, Y. (Creator), Wang, M. (Contributor), Liu, R. (Creator), Ge, S. (Creator), Wing, R. A. (Creator) & Chen, M. (Contributor), figshare, 2016
DOI: 10.6084/m9.figshare.c.3597560_d2.v1, https://springernature.figshare.com/articles/dataset/Additional_file_7_Table_S6_of_The_impact_and_origin_of_copy_number_variations_in_the_Oryza_species/4322492/1
Dataset
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Metadata record for: A platinum standard pan-genome resource that represents the population structure of Asian rice
Zhou, Y. (Contributor), Chebotarov, D. (Contributor), Kudrna, D. (Contributor), Llaca, V. (Contributor), Lee, S. (Contributor), Rajasekar, S. (Contributor), Mohammed, N. (Contributor), Al-Bader, N. (Contributor), Sobel-Sorenson, C. (Contributor), Parakkal, P. (Contributor), Arbelaez, L. J. (Contributor), Franco, N. (Contributor), Alexandrov, N. (Contributor), Hamilton, N. R. S. (Contributor), Leung, H. (Contributor), Mauleon, R. (Contributor), Lorieux, M. (Contributor), Zuccolo, A. (Contributor), McNally, K. (Contributor), Zhang, J. (Contributor) & Wing, R. A. (Contributor), figshare, 2020
DOI: 10.6084/m9.figshare.11950596.v1, https://springernature.figshare.com/articles/Metadata_record_for_A_platinum_standard_pan-genome_resource_that_represents_the_population_structure_of_Asian_rice/11950596/1
Dataset
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Bionano optical maps of Twelve Platinum-Standard Reference Genomes Sequence
Zhou, Y. (Creator), Chebotarov, D. (Creator), Kudrna, D. (Creator), Llaca, V. (Creator), Lee, S. (Contributor), Rajasekar, S. (Creator), Mohammed, N. (Creator), Al-Bader, N. (Creator), Sobel-Sorenson, C. (Creator), Parakkal, P. (Contributor), Arbelaez, L. J. (Contributor), Franco, N. (Creator), Alexandrov, N. (Contributor), Hamilton, N. R. S. (Contributor), Leung, H. (Creator), Mauleon, R. (Creator), Lorieux, M. (Creator), Zuccolo, A. (Creator), McNally, K. (Creator), Zhang, J. (Contributor) & Wing, R. A. (Creator), figshare, 2020
DOI: 10.6084/m9.figshare.11904876.v1, https://springernature.figshare.com/articles/Bionano_optical_maps_of_Twelve_Platinum-Standard_Reference_Genomes_Sequence/11904876/1
Dataset
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Data from: Extensive gene tree discordance and hemiplasy shaped the genomes of North American columnar cacti
Copetti, D. (Contributor), Búrquez, A. (Contributor), Bustamante, E. (Contributor), Charboneau, J. L. M. (Contributor), Childs, K. L. (Contributor), Eguiarte, L. E. (Contributor), Lee, S. (Contributor), Liu, T. L. (Contributor), Mcmahon, M. M. (Contributor), Whiteman, N. K. (Contributor), Wing, R. A. (Contributor), Wojciechowski, M. F. (Contributor) & Sanderson, M. J. (Contributor), ZENODO, 2018
DOI: 10.5061/dryad.72c2g, https://zenodo.org/record/4971340
Dataset
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Additional file 6 of Gene fusion as an important mechanism to generate new genes in the genus Oryza
Zhou, Y. (Creator), Zhang, C. (Creator), Zhang, L. (Creator), Ye, Q. (Creator), Liu, N. (Creator), Wang, M. (Creator), Long, G. (Creator), Fan, W. (Creator), Long, M. (Creator) & Wing, R. A. (Creator), figshare, 2022
DOI: 10.6084/m9.figshare.20081171.v1, https://springernature.figshare.com/articles/dataset/Additional_file_6_of_Gene_fusion_as_an_important_mechanism_to_generate_new_genes_in_the_genus_Oryza/20081171/1
Dataset