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Collaborations and top research areas from the last five years
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DeepBiome: A Phylogenetic Tree Informed Deep Neural Network for Microbiome Data Analysis
Zhai, J., Choi, Y., Yang, X., Chen, Y., Knox, K., Twigg, H. L., Won, J. H., Zhou, H. & Zhou, J. J., Apr 2025, In: Statistics in Biosciences. 17, 1, p. 191-215 25 p., e1004977.Research output: Contribution to journal › Article › peer-review
Open Access1 Link opens in a new tab Scopus citations -
Identification of Coccidioidomycosis Immunoreactive Peptides That Recall T-Cell Responses Indicating Past Exposure
Kala, M., Ndiaye, M. D. B., Kelley, E., Harvey, M., Babur, F., Grischo, G., Marshall, J. S., Yi, J., Engelbrektson, A. L., Altin, J. A., Barker, B. M., Keim, P., Knox, K. S. & Settles, E. W., Jun 15 2025, In: Journal of Infectious Diseases. 231, 6, p. 1619-1628 10 p.Research output: Contribution to journal › Article › peer-review
Open Access2 Link opens in a new tab Scopus citations -
Impact of carbon nanotubes on pulmonary disorders attributed to occupational and environmental exposures
Mohammad, A. N., Moreno, Y., Grischo, G., Liang, Y., Iusim, S., Suliman, S., Wang, T., Kalinichenko, V. V., Knox, K. S. & Kala, M., Nov 2025, In: Nanomedicine: Nanotechnology, Biology, and Medicine. 70, 102871.Research output: Contribution to journal › Review article › peer-review
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Single-Cell and Spatial Transcriptomics Identified Fatty Acid-Binding Proteins Controlling Endothelial Glycolytic and Arterial Programming in Pulmonary Hypertension
Liu, B., Yi, D., Li, S., Ramirez, K., Xia, X., Cao, Y., Zhao, H., Tripathi, A., Qiu, S., Kala, M., Rafikov, R., Gu, H., De Jesus Perez, V., Lemay, S. E., Glembotski, C. C., Knox, K. S., Bonnet, S., Kalinichenko, V. V., Zhao, Y. Y. & Fallon, M. B. & 2 others, , Jul 1 2025, In: Arteriosclerosis, Thrombosis, and Vascular Biology. 45, 7, p. 1145-1165 21 p.Research output: Contribution to journal › Article › peer-review
Open Access9 Link opens in a new tab Scopus citations -
Treatment of Invasive Pulmonary Aspergillosis and Preventive and Empirical Therapy for Invasive Candidiasis in Adult Pulmonary and Critical Care Patients: An Official American Thoracic Society Clinical Practice Guideline
on behalf of the American Thoracic Society Assembly on Pulmonary Infections and Tuberculosis, Jan 2025, In: American journal of respiratory and critical care medicine. 211, 1, p. 34-53 20 p.Research output: Contribution to journal › Review article › peer-review
Open Access19 Link opens in a new tab Scopus citations
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Genomic Analysis of Immunity and Lung Inflammation in HIV Infection
Knox, K. S. (CoPI)
Project: Research project
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Non-catalytic FAK inhibitors as novel therapeutics for lung fibrosis
Marlowe, T. (PI) & Knox, K. S. (CoPI)
Project: Research project
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Pulmonary CD4+ T-Cell Repopulation in Immune Reconstituion Syndrome
Knox, K. S. (PI)
Project: Research project
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Non-catalytic FAK inhibitors as novel therapeutics for lung fibrosis
Marlowe, T. (PI) & Knox, K. S. (CoPI)
Project: Research project
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Datasets
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Additional file 4 of PTK2-associated gene signature could predict the prognosis of IPF
Polmann, M. (Creator), Feng, A. (Creator), Caro, Y. M. (Creator), Marlowe, T. A. (Creator), Kala, M. (Creator), Knox, K. S. (Creator), Black, S. M. (Creator), Wickremasinghe, P. D. (Creator), Grischo, G. (Creator) & Gardner, C. (Creator), figshare, 2024
DOI: 10.6084/m9.figshare.26650098, https://springernature.figshare.com/articles/figure/Additional_file_4_of_PTK2-associated_gene_signature_could_predict_the_prognosis_of_IPF/26650098
Dataset
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Peripheral blood gene expression as a novel genomic biomarker in complicated sarcoidosis
Zhou, T. (Contributor), Knox, K. S. (Contributor) & Garcia, J. G. N. (Contributor), Gene Expression Omnibus, May 10 2012
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE37912
Dataset
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Genome-wide gene expression profile analysis in pulmonary sarcoidosis
Knox, K. S. (Contributor), Gene Expression Omnibus, Jun 10 2009
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE16538
Dataset
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PTK2-associated gene signature could predict the prognosis of IPF
Gardner, C. (Creator), Polmann, M. (Creator), Marlowe, T. A. (Creator), Knox, K. S. (Creator), Wickremasinghe, P. D. (Creator), Grischo, G. (Creator), Feng, A. (Creator), Caro, Y. M. (Creator), Kala, M. (Creator) & Black, S. M. (Creator), figshare, 2024
DOI: 10.6084/m9.figshare.c.6967116.v1, https://springernature.figshare.com/collections/PTK2-associated_gene_signature_could_predict_the_prognosis_of_IPF/6967116/1
Dataset
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Differential transcriptomics in sarcoidosis lung and lymph node granulomas with comparisons to pathogen-specific granulomas
Casanova, N. G. (Creator), Gonzalez-Garay, M. L. (Creator), Sun, B. (Creator), Bime, C. (Creator), Sun, X. (Creator), Knox, K. S. (Creator), Crouser, E. D. (Creator), Sammani, N. (Creator), Gonzales, T. (Creator), Natt, B. (Creator), Chaudhary, S. (Creator), Lussier, Y. (Creator) & Garcia, J. G. N. (Creator), figshare, 2020
DOI: 10.6084/m9.figshare.c.5230243, https://springernature.figshare.com/collections/Differential_transcriptomics_in_sarcoidosis_lung_and_lymph_node_granulomas_with_comparisons_to_pathogen-specific_granulomas/5230243
Dataset