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Collaborations and top research areas from the last five years
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Emerging technologies in poultry genomics: Unlocking innovation for the future of sustainable production
Zhou, H., McCarthy, F. M., Kim, T. H., Warren, W. & Zhang, G., Feb 2026, In: Poultry science. 105, 2, 106240.Research output: Contribution to journal › Article › peer-review
Open Access -
CAT-GxD: Centralized access to gene expression datasets
Roxas, B. A. P., Roxas, J. L., Guo, J. S., LeBauer, D. S., McCarthy, F., Vedantam, G. & Viswanathan, V. K., Dec 2025, In: Anaerobe. 96, 103005.Research output: Contribution to journal › Article › peer-review
Open Access1 Link opens in a new tab Scopus citations -
Normative aging results in degradation of gene networks in a zebra finch basal ganglia nucleus dedicated to vocal behavior
Higgins, C. M., Vishwanath, S. H., McCarthy, F. M., Gordon, M. L., Peter, B. & Miller, J. E., May 2025, In: Neurobiology of Aging. 149, p. 19-33 15 p.Research output: Contribution to journal › Article › peer-review
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The Farm Animal Genotype–Tissue Expression (FarmGTEx) Project
The FarmGTEx Consortium, Apr 2025, In: Nature Genetics. 57, 4, p. 786-796 11 p., 604.Research output: Contribution to journal › Article › peer-review
Open Access25 Link opens in a new tab Scopus citations -
Comparative proteomic analysis of tail regeneration in the green anole lizard, Anolis carolinensis
Xu, C., Hutchins, E. D., Eckalbar, W., Pendarvis, K., Benson, D. M., Lake, D. F., McCarthy, F. M. & Kusumi, K., Jan 2024, In: Natural Sciences. 4, 1, e20210421.Research output: Contribution to journal › Article › peer-review
Open Access
Datasets
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Master's thesis Supplementary Data
Vishwanath, S. H. (Creator) & McCarthy, F. M. (Creator), OSF, 2024
DOI: 10.17605/osf.io/27b4h, https://osf.io/27b4h/
Dataset
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Current challenges and future of agricultural genomes to phenomes in the USA
Schnable, P. S. (Creator), Tuggle, C. K. (Creator), Guadagno, C. R. (Creator), das Choudhury, S. (Contributor), Lubberstedt, T. T. (Contributor), Dorea, J. R. R. (Contributor), Lipka, A. E. (Creator), Thornton, K. J. (Creator), Lyons, E. H. (Creator), Daigle, C. L. (Creator), Scott, N. M. (Creator), Fulton, J. E. (Creator), Clarke, J. L. (Creator), Campbell, J. D. (Creator), Chung, H. C. (Creator), Rowan, T. N. (Creator), McCarthy, F. M. (Creator), Van Tassell, C. P. (Creator), Thompson, A. M. (Creator), Murray, S. C. (Creator), Mckay, S. D. (Contributor), Lawrence-Dill, C. J. (Creator), Sheehan, M. J. (Creator), Dekkers, J. C. M. (Creator), Riggs, P. K. (Creator), Murdoch, B. M. (Creator), Steibel, J. P. (Creator), Kramer, L. M. (Creator), Hagen, D. E. (Creator), Benes, B. (Contributor), Ertl, D. S. (Creator), Fragomeni, B. D. O. (Creator) & Hess, A. S. (Creator), figshare, 2024
DOI: 10.6084/m9.figshare.c.7007210.v1, https://springernature.figshare.com/collections/Current_challenges_and_future_of_agricultural_genomes_to_phenomes_in_the_USA/7007210/1
Dataset
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Supplementary Material for: Fourth Report on Chicken Genes and Chromosomes 2022
Smith, J. (Contributor), Alfieri, J. M. (Contributor), Anthony, N. (Contributor), Arensburger, P. (Contributor), Athrey, G. N. (Contributor), Balacco, J. (Contributor), Balic, A. (Contributor), Bardou, P. (Contributor), Barela, P. (Contributor), Bigot, Y. (Contributor), Blackmon, H. (Contributor), Borodin, P. M. (Contributor), Carroll, R. (Contributor), Casono, M. C. (Contributor), Charles, M. (Contributor), Cheng, H. (Contributor), Chiodi, M. (Contributor), Cigan, L. (Contributor), Coghill, L. M. (Contributor), Crooijmans, R. (Contributor), Das, N. (Contributor), Davey, S. (Contributor), Davidian, A. (Contributor), Degalez, F. (Contributor), Dekkers, J. M. (Contributor), Derks, M. (Contributor), Diack, A. B. (Contributor), Djikeng, A. (Contributor), Drechsler, Y. (Contributor), Dyomin, A. (Contributor), Fedrigo, O. (Contributor), Fiddaman, S. R. (Contributor), Formenti, G. (Contributor), Frantz, L. A. F. (Contributor), Fulton, J. E. (Contributor), Gaginskaya, E. (Contributor), Galkina, S. (Contributor), Gallardo, R. A. (Contributor), Geibel, J. (Contributor), Gheyas, A. A. (Contributor), Godinez, C. J. P. (Contributor), Goodell, A. (Contributor), Griffin, D. K. (Contributor), Haase, B. (Contributor), Han, J.-L. (Contributor), Hanotte, O. (Contributor), Henderson, L. J. (Contributor), Hou, Z.-C. (Contributor), Howe, K. (Contributor), Huynh, L. (Contributor), Ilatsia, E. (Contributor), Jarvis, E. D. (Contributor), Johnson, S. M. (Contributor), Kaufman, J. (Contributor), Kelly, T. (Contributor), Kemp, S. (Contributor), Kern, C. (Contributor), Keroack, J. H. (Contributor), Klopp, C. (Contributor), Lagarrigue, S. (Contributor), Lamont, S. J. (Contributor), Lange, M. (Contributor), Lanke, A. (Contributor), Larkin, D. M. (Contributor), Larson, G. (Contributor), Layos, J. K. N. (Contributor), Lebrasseur, O. (Contributor), Malinovskaya, L. P. (Contributor), Martin, R. J. (Contributor), Mason, A. S. (Contributor), McCarthy, F. M. (Contributor), McGrew, M. J. (Contributor), Mountcastle, J. (Contributor), Muhonja, C. K. (Contributor), Muir, W. (Contributor), Muret, K. (Contributor), Murphy, T. D. (Contributor), Ng'ang'a, I. (Contributor), Nishibori, M. (Contributor), O'Connor, R. E. (Contributor), Ogugo, M. (Contributor), Okimoto, R. (Contributor), Ouko, O. (Contributor), Patel, H. R. (Contributor), Perini, F. (Contributor), Pigozzi, M. I. (Contributor), Potter, K. C. (Contributor), Price, P. D. (Contributor), Reimer, C. (Contributor), Rice, E. S. (Contributor), Rocos, N. (Contributor), Rogers, T. F. (Contributor), Saelao, P. (Contributor), Schauer, J. (Contributor), Schnabel, R. D. (Contributor), Schneider, V. A. (Contributor), Simianer, H. (Contributor) & Smith, A. (Contributor), Karger Publishers, 2023
DOI: 10.6084/m9.figshare.21976532.v1, https://karger.figshare.com/articles/dataset/Supplementary_Material_for_Fourth_Report_on_Chicken_Genes_and_Chromosomes_2022/21976532/1
Dataset
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Supplementary Material for: Fourth Report on Chicken Genes and Chromosomes 2022
Smith, J. (Contributor), Alfieri, J. M. (Contributor), Anthony, N. (Contributor), Arensburger, P. (Contributor), Athrey, G. N. (Contributor), Balacco, J. (Contributor), Balic, A. (Contributor), Bardou, P. (Contributor), Barela, P. (Contributor), Bigot, Y. (Contributor), Blackmon, H. (Contributor), Borodin, P. M. (Contributor), Carroll, R. (Contributor), Casono, M. C. (Contributor), Charles, M. (Contributor), Cheng, H. (Contributor), Chiodi, M. (Contributor), Cigan, L. (Contributor), Coghill, L. M. (Contributor), Crooijmans, R. (Contributor), Das, N. (Contributor), Davey, S. (Contributor), Davidian, A. (Contributor), Degalez, F. (Contributor), Dekkers, J. M. (Contributor), Derks, M. (Contributor), Diack, A. B. (Contributor), Djikeng, A. (Contributor), Drechsler, Y. (Contributor), Dyomin, A. (Contributor), Fedrigo, O. (Contributor), Fiddaman, S. R. (Contributor), Formenti, G. (Contributor), Frantz, L. A. F. (Contributor), Fulton, J. E. (Contributor), Gaginskaya, E. (Contributor), Galkina, S. (Contributor), Gallardo, R. A. (Contributor), Geibel, J. (Contributor), Gheyas, A. A. (Contributor), Godinez, C. J. P. (Contributor), Goodell, A. (Contributor), Griffin, D. K. (Contributor), Haase, B. (Contributor), Han, J.-L. (Contributor), Hanotte, O. (Contributor), Henderson, L. J. (Contributor), Hou, Z.-C. (Contributor), Howe, K. (Contributor), Huynh, L. (Contributor), Ilatsia, E. (Contributor), Jarvis, E. D. (Contributor), Johnson, S. M. (Contributor), Kaufman, J. (Contributor), Kelly, T. (Contributor), Kemp, S. (Contributor), Kern, C. (Contributor), Keroack, J. H. (Contributor), Klopp, C. (Contributor), Lagarrigue, S. (Contributor), Lamont, S. J. (Contributor), Lange, M. (Contributor), Lanke, A. (Contributor), Larkin, D. M. (Contributor), Larson, G. (Contributor), Layos, J. K. N. (Contributor), Lebrasseur, O. (Contributor), Malinovskaya, L. P. (Contributor), Martin, R. J. (Contributor), Mason, A. S. (Contributor), McCarthy, F. M. (Contributor), McGrew, M. J. (Contributor), Mountcastle, J. (Contributor), Muhonja, C. K. (Contributor), Muir, W. (Contributor), Muret, K. (Contributor), Murphy, T. D. (Contributor), Ng'ang'a, I. (Contributor), Nishibori, M. (Contributor), O'Connor, R. E. (Contributor), Ogugo, M. (Contributor), Okimoto, R. (Contributor), Ouko, O. (Contributor), Patel, H. R. (Contributor), Perini, F. (Contributor), Pigozzi, M. I. (Contributor), Potter, K. C. (Contributor), Price, P. D. (Contributor), Reimer, C. (Contributor), Rice, E. S. (Contributor), Rocos, N. (Contributor), Rogers, T. F. (Contributor), Saelao, P. (Contributor), Schauer, J. (Contributor), Schnabel, R. D. (Contributor), Schneider, V. A. (Contributor), Simianer, H. (Contributor) & Smith, A. (Contributor), Karger Publishers, 2023
DOI: 10.6084/m9.figshare.21967058, https://karger.figshare.com/articles/dataset/Supplementary_Material_for_Fourth_Report_on_Chicken_Genes_and_Chromosomes_2022/21967058
Dataset
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Annotation and analysis of three crocodilian genomes
Green, R. E. (Creator), Braun, E. L. (Creator), Armstrong, J. (Creator), Earl, D. (Creator), Nguyen, N. (Creator), Hickey, G. (Creator), Vandewege, M. W. (Creator), St John, J. A. (Creator), Capella-Gutiérrez, S. (Creator), Castoe, T. A. (Creator), Kern, C. (Creator), Fujita, M. K. (Creator), Opazo, J. C. (Creator), Jurka, J. (Creator), Kojima, K. K. (Creator), Caballero, J. (Creator), Hubley, R. M. (Creator), Smit, A. F. (Creator), Platt, R. N. (Creator), Lavoie, C. A. (Creator), Ramakodi, M. P. (Creator), Suh, A. (Creator), Miles, L. (Creator), Chong, A. Y. (Creator), Jaratlerdsiri, W. (Creator), Gongora, J. (Creator), Moran, C. (Creator), Iriarte, A. (Creator), McCormack, J. (Creator), Burgess, S. C. (Creator), Edwards, S. V. (Creator), Lyons, E. (Creator), Williams, C. (Creator), Breen, M. (Creator), Howard, J. T. (Creator), Gresham, C. R. (Creator), Peterson, D. G. (Creator), Schmitz, J. (Creator), Pollock, D. D. (Creator), Haussler, D. (Creator), Triplett, E. W. (Creator), Zhang, G. (Creator), Irie, N. (Creator), Jarvis, E. D. (Creator), Brochu, C. A. (Creator), Schmidt, C. J. (Creator), McCarthy, F. M. (Creator), Faircloth, B. C. (Creator), Hoffmann, F. G. (Creator), Glenn, T. C. (Creator), Gabaldón, T. (Creator), Paten, B. (Creator), Ray, D. A. (Creator), Haussler, D. (Creator), Gabaldón, T. (Creator) & Paten, B. (Creator), GigaScience Database, Oct 21 2014
DOI: 10.5524/100125, http://gigadb.org/dataset/100125
Dataset