Immunobiology

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• Additional file 1 of Extensive evaluation of ATAC-seq protocols for native or formaldehyde-fixed nuclei

  Zhang, H. (Creator), Rice, M. E. (Creator), Alvin, J. W. (Creator), Farrera-Gaffney, D. (Creator), Galligan, J. J. (Creator), Johnson, M. D. L. (Creator) & Cusanovich, D. A. (Creator), figshare, 2022

  DOI: 10.6084/m9.figshare.19373283, https://springernature.figshare.com/articles/dataset/Additional_file_1_of_Extensive_evaluation_of_ATAC-seq_protocols_for_native_or_formaldehyde-fixed_nuclei/19373283

  Dataset

• Additional file 3: of Comparative omics and feeding manipulations in chicken indicate a shift of the endocrine role of visceral fat towards reproduction

  Bornelöv, S. (Creator), Seroussi, E. (Creator), Yosefi, S. (Creator), Benjamini, S. (Creator), Miyara, S. (Contributor), Ruzal, M. (Creator), Grabherr, M. (Creator), Rafati, N. (Creator), Molin, A. (Contributor), Pendavis, K. (Creator), Burgess, S. C. (Creator), Andersson, L. (Creator) & Friedman-Einat, M. (Creator), figshare, 2018

  DOI: 10.6084/m9.figshare.6188111.v1, https://springernature.figshare.com/articles/Additional_file_3_of_Comparative_omics_and_feeding_manipulations_in_chicken_indicate_a_shift_of_the_endocrine_role_of_visceral_fat_towards_reproduction/6188111/1

  Dataset

• Systems toxicology identifies mechanistic impacts of 2-amino-4,6-dinitrotoluene (2A-DNT) exposure in Northern Bobwhite

  Gust, K. A. (Creator), Nanduri, B. (Creator), Rawat, A. (Creator), Wilbanks, M. S. (Creator), Ang, C. Y. (Creator), Johnson, D. R. (Creator), Pendarvis, K. (Creator), Chen, X. (Contributor), Quinn, M. J. (Creator), Johnson, M. S. (Creator), Burgess, S. C. (Creator), Perkins, E. J. (Creator) & Xianfeng, C. (Contributor), figshare, 2015

  DOI: 10.6084/m9.figshare.c.3623417.v1, https://figshare.com/collections/Systems_toxicology_identifies_mechanistic_impacts_of_2-amino-4_6-dinitrotoluene_2A-DNT_exposure_in_Northern_Bobwhite/3623417/1

  Dataset

• Correspondence on Lovell et al.: identification of chicken genes previously assumed to be evolutionarily lost

  Bornelöv, S. (Contributor), Seroussi, E. (Creator), Yosefi, S. (Creator), Pendavis, K. (Creator), Burgess, S. C. (Creator), Grabherr, M. (Creator), Friedman-Einat, M. (Creator) & Andersson, L. (Creator), figshare, 2017

  DOI: 10.6084/m9.figshare.c.3803608.v1, https://figshare.com/collections/Correspondence_on_Lovell_et_al_identification_of_chicken_genes_previously_assumed_to_be_evolutionarily_lost/3803608/1

  Dataset

• Differential transcriptomics in sarcoidosis lung and lymph node granulomas with comparisons to pathogen-specific granulomas

  Casanova, N. (Creator), Gonzalez-Garay, M. L. (Creator), Sun, B. (Creator), Bime, C. (Creator), Sun, X. (Creator), Knox, K. S. (Creator), Crouser, E. D. (Creator), Sammani, N. (Creator), Gonzales, T. (Creator), Natt, B. (Creator), Chaudhary, S. (Creator), Lussier, Y. (Creator) & Garcia, J. G. (Creator), figshare, 2020

  DOI: 10.6084/m9.figshare.c.5230243, https://springernature.figshare.com/collections/Differential_transcriptomics_in_sarcoidosis_lung_and_lymph_node_granulomas_with_comparisons_to_pathogen-specific_granulomas/5230243

  Dataset

• Rapidly induced fucosylation of intestinal epithelium sustains host-commensal symbiosis during sickness

  Schenten, D. (Contributor), ArrayExpress, 2014

  https://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-60874

  Dataset

• Supplemental information for Ripperger et al

  Bhattacharya, D. (Creator), Mendeley Data, 2020

  DOI: 10.17632/rj4gxdd7sg.1, https://data.mendeley.com/datasets/rj4gxdd7sg

  Dataset

• 1M0F : Structural Studies of Bacteriophage alpha3 Assembly, Cryo-electron microscopy

  Bernal, R. A. (Contributor), Hafenstein, S. (Contributor), Olson, N. H. (Contributor), Bowman, V. D. (Contributor), Chipman, P. R. (Contributor), Baker, T. S. (Contributor), Fane, B. A. (Contributor) & Rossmann, M. G. (Contributor), RCSB-PDB, 2002

  DOI: 10.2210/pdb1m0f/pdb, https://www.rcsb.org/structure/1M0F

  Dataset

• Alignment data for "Host translesion polymerases are required for viral genome integrity"

  Zeltzer, S. (Creator), Longmire, P. (Creator), Svoboda, M. (Creator), Bosco, G. (Creator), Goodrum, F. (Creator) & Bosco, G. (Creator), University of Arizona Research Data Repository, 2022

  DOI: 10.25422/azu.data.19127993.v1, https://arizona.figshare.com/articles/dataset/Alignment_data_for_Host_translesion_polymerases_are_required_for_viral_genome_integrity_/19127993/1

  Dataset

• Additional file 6 of Extensive evaluation of ATAC-seq protocols for native or formaldehyde-fixed nuclei

  Zhang, H. (Creator), Rice, M. E. (Creator), Alvin, J. W. (Creator), Farrera-Gaffney, D. (Creator), Galligan, J. J. (Creator), Johnson, M. D. L. (Creator) & Cusanovich, D. A. (Creator), figshare, 2022

  DOI: 10.6084/m9.figshare.19373301.v1, https://springernature.figshare.com/articles/dataset/Additional_file_6_of_Extensive_evaluation_of_ATAC-seq_protocols_for_native_or_formaldehyde-fixed_nuclei/19373301/1

  Dataset

• Additional file 9 of Extensive evaluation of ATAC-seq protocols for native or formaldehyde-fixed nuclei

  Zhang, H. (Creator), Rice, M. E. (Creator), Alvin, J. W. (Creator), Farrera-Gaffney, D. (Creator), Galligan, J. J. (Creator), Johnson, M. D. L. (Creator) & Cusanovich, D. A. (Creator), figshare, 2022

  DOI: 10.6084/m9.figshare.19373310.v1, https://springernature.figshare.com/articles/dataset/Additional_file_9_of_Extensive_evaluation_of_ATAC-seq_protocols_for_native_or_formaldehyde-fixed_nuclei/19373310/1

  Dataset

• Additional file 3 of Extensive evaluation of ATAC-seq protocols for native or formaldehyde-fixed nuclei

  Zhang, H. (Creator), Rice, M. E. (Creator), Alvin, J. W. (Creator), Farrera-Gaffney, D. (Creator), Galligan, J. J. (Creator), Johnson, M. D. L. (Creator) & Cusanovich, D. A. (Creator), figshare, 2022

  DOI: 10.6084/m9.figshare.19373289.v1, https://springernature.figshare.com/articles/dataset/Additional_file_3_of_Extensive_evaluation_of_ATAC-seq_protocols_for_native_or_formaldehyde-fixed_nuclei/19373289/1

  Dataset

• Additional file 1: of Systems toxicology identifies mechanistic impacts of 2-amino-4,6-dinitrotoluene (2A-DNT) exposure in Northern Bobwhite

  Gust, K. A. (Creator), Nanduri, B. (Creator), Rawat, A. (Creator), Wilbanks, M. S. (Creator), Ang, C. Y. (Creator), Johnson, D. R. (Creator), Pendarvis, K. (Creator), Chen, X. (Contributor), Quinn, M. J. (Creator), Johnson, M. S. (Creator), Burgess, S. C. (Creator), Perkins, E. J. (Creator) & Xianfeng, C. (Contributor), figshare, 2015

  DOI: 10.6084/m9.figshare.c.3623417_d1, https://springernature.figshare.com/articles/dataset/Additional_file_1_of_Systems_toxicology_identifies_mechanistic_impacts_of_2-amino-4_6-dinitrotoluene_2A-DNT_exposure_in_Northern_Bobwhite/4401134

  Dataset

• Additional file 7 of Extensive evaluation of ATAC-seq protocols for native or formaldehyde-fixed nuclei

  Zhang, H. (Creator), Rice, M. E. (Creator), Alvin, J. W. (Creator), Farrera-Gaffney, D. (Creator), Galligan, J. J. (Creator), Johnson, M. D. L. (Creator) & Cusanovich, D. A. (Creator), figshare, 2022

  DOI: 10.6084/m9.figshare.19373304, https://springernature.figshare.com/articles/dataset/Additional_file_7_of_Extensive_evaluation_of_ATAC-seq_protocols_for_native_or_formaldehyde-fixed_nuclei/19373304

  Dataset

• Two separate defects affecting true naive or virtual memory T cell precursors combine to reduce naive T cell responses with aging.

  Nikolich-Zugich, J. (Contributor), ImmPort, 2015

  DOI: 10.21430/m337h2fffj, https://www.immport.org/shared/study/SDY649

  Dataset

• Additional file 2: of Comparative omics and feeding manipulations in chicken indicate a shift of the endocrine role of visceral fat towards reproduction

  Bornelöv, S. (Contributor), Seroussi, E. (Creator), Yosefi, S. (Creator), Benjamini, S. (Creator), Miyara, S. (Contributor), Ruzal, M. (Creator), Grabherr, M. (Creator), Rafati, N. (Creator), Molin, A. (Contributor), Pendavis, K. (Creator), Burgess, S. C. (Creator), Andersson, L. (Creator) & Friedman-Einat, M. (Creator), figshare, 2018

  DOI: 10.6084/m9.figshare.6188090, https://springernature.figshare.com/articles/Additional_file_2_of_Comparative_omics_and_feeding_manipulations_in_chicken_indicate_a_shift_of_the_endocrine_role_of_visceral_fat_towards_reproduction/6188090

  Dataset

• The genome of the Indian gharial (Gavialis gangeticus)

  Green, R. E. (Creator), Braun, E. L. (Creator), Armstrong, J. (Creator), Earl, D. (Creator), Nguyen, N. (Creator), Hickey, G. (Creator), Vandewege, M. W. (Creator), St John, J. A. (Creator), Capella-Gutiérrez, S. (Creator), Castoe, T. A. (Creator), Kern, C. (Creator), Fujita, M. K. (Creator), Opazo, J. C. (Creator), Jurka, J. (Creator), Kojima, K. K. (Creator), Caballero, J. (Creator), Hubley, R. M. (Creator), Smit, A. F. (Creator), Platt, R. N. (Creator), Lavoie, C. A. (Creator), Ramakodi, M. P. (Creator), Suh, A. (Creator), Miles, L. (Creator), Chong, A. Y. (Creator), Jaratlerdsiri, W. (Creator), Gongora, J. (Creator), Moran, C. (Creator), Iriarte, A. (Creator), McCormack, J. (Creator), Burgess, S. C. (Creator), Edwards, S. V. (Creator), Lyons, E. H. (Creator), Williams, C. (Creator), Breen, M. (Creator), Howard, J. T. (Creator), Gresham, C. R. (Creator), Peterson, D. G. (Creator), Schmitz, J. (Creator), Pollock, D. D. (Creator), Haussler, D. (Creator), Triplett, E. W. (Creator), Zhang, G. (Creator), Irie, N. (Creator), Jarvis, E. D. (Creator), Brochu, C. A. (Creator), Schmidt, C. J. (Creator), McCarthy, F. M. (Creator), Faircloth, B. C. (Creator), Hoffmann, F. G. (Creator), Glenn, T. C. (Creator), Gabaldón, T. (Creator), Paten, B. (Creator), Ray, D. A. (Creator), Haussler, D. (Creator), Gabaldón, T. (Creator) & Paten, B. (Creator), GigaScience Database, Oct 21 2014

  DOI: 10.5524/100128, http://gigadb.org/dataset/100128

  Dataset

• Additional file 2 of Evaluation of T-cell aging-related immune phenotypes in the context of biological aging and multimorbidity in the Health and Retirement Study

  Ramasubramanian, R. (Creator), Meier, H. C. S. (Creator), Vivek, S. (Creator), Klopack, E. (Creator), Crimmins, E. M. (Creator), Faul, J. (Creator), Nikolich-Zugich, J. (Creator) & Thyagarajan, B. (Creator), figshare, 2022

  DOI: 10.6084/m9.figshare.20347483, https://springernature.figshare.com/articles/dataset/Additional_file_2_of_Evaluation_of_T-cell_aging-related_immune_phenotypes_in_the_context_of_biological_aging_and_multimorbidity_in_the_Health_and_Retirement_Study/20347483

  Dataset

• Supplementary Material for: Tollip Inhibits ST2 Signaling in Airway Epithelial Cells Exposed to Type 2 Cytokines and Rhinovirus

  Dakhama, A. (Creator), Pavelka, N. (Creator), Voelker, D. (Creator), Seibold, M. (Creator), Ledford, J. (Creator), Kraft, M. (Creator), Li, L. (Creator) & Chu, H. W. (Creator), figshare, 2019

  DOI: 10.6084/m9.figshare.7916381, https://karger.figshare.com/articles/Supplementary_Material_for_Tollip_Inhibits_ST2_Signaling_in_Airway_Epithelial_Cells_Exposed_to_Type_2_Cytokines_and_Rhinovirus/7916381

  Dataset

• Comparison of type 1 conventional dendritic cells pre-cDC1 and CD8+ cDC1 and dendritic cells from bendamustine- or cyclophosphamide-treated mice

  Molina, M. S. (Creator) & Katsanis, E. (Creator), University of Arizona Research Data Repository, 2021

  DOI: 10.25422/azu.data.14241902, https://arizona.figshare.com/articles/dataset/Comparison_of_type_1_conventional_dendritic_cells_pre-cDC1_and_CD8_cDC1_and_dendritic_cells_from_bendamustine-_or_cyclophosphamide-treated_mice/14241902

  Dataset

• Dynamics of dark fermentation microbial communities in the light of lactate and butyrate production

  Detman, A. (Creator), Laubitz, D. (Creator), Chojnacka, A. (Creator), Kiela, P. R. (Creator), Salamon, A. (Creator), Barberan, A. (Creator), Chen, Y. (Creator), Yang, F. (Creator), Błaszczyk, M. K. (Creator) & Sikora, A. (Creator), figshare, 2021

  DOI: 10.6084/m9.figshare.c.5512697.v1, https://springernature.figshare.com/collections/Dynamics_of_dark_fermentation_microbial_communities_in_the_light_of_lactate_and_butyrate_production/5512697/1

  Dataset

• Additional file 2 of Dynamics of dark fermentation microbial communities in the light of lactate and butyrate production

  Detman, A. (Creator), Laubitz, D. (Creator), Chojnacka, A. (Creator), Kiela, P. R. (Creator), Salamon, A. (Creator), Barberan, A. (Creator), Chen, Y. (Creator), Yang, F. (Creator), Błaszczyk, M. K. (Creator) & Sikora, A. (Creator), figshare, 2021

  DOI: 10.6084/m9.figshare.14985065.v1, https://springernature.figshare.com/articles/dataset/Additional_file_2_of_Dynamics_of_dark_fermentation_microbial_communities_in_the_light_of_lactate_and_butyrate_production/14985065/1

  Dataset

• Additional file 7 of Dynamics of dark fermentation microbial communities in the light of lactate and butyrate production

  Detman, A. (Creator), Laubitz, D. (Creator), Chojnacka, A. (Creator), Kiela, P. R. (Creator), Salamon, A. (Creator), Barberan, A. (Creator), Chen, Y. (Creator), Yang, F. (Creator), Błaszczyk, M. K. (Creator) & Sikora, A. (Creator), figshare, 2021

  DOI: 10.6084/m9.figshare.14985080.v1, https://springernature.figshare.com/articles/dataset/Additional_file_7_of_Dynamics_of_dark_fermentation_microbial_communities_in_the_light_of_lactate_and_butyrate_production/14985080/1

  Dataset

• Additional file 2 of Dynamics of dark fermentation microbial communities in the light of lactate and butyrate production

  Detman, A. (Creator), Laubitz, D. (Creator), Chojnacka, A. (Creator), Kiela, P. R. (Creator), Salamon, A. (Creator), Barberan, A. (Creator), Chen, Y. (Creator), Yang, F. (Creator), Błaszczyk, M. K. (Creator) & Sikora, A. (Creator), figshare, 2021

  DOI: 10.6084/m9.figshare.14985065, https://springernature.figshare.com/articles/dataset/Additional_file_2_of_Dynamics_of_dark_fermentation_microbial_communities_in_the_light_of_lactate_and_butyrate_production/14985065

  Dataset

• Additional file 1: of Comparative omics and feeding manipulations in chicken indicate a shift of the endocrine role of visceral fat towards reproduction

  Bornelöv, S. (Creator), Seroussi, E. (Creator), Yosefi, S. (Creator), Benjamini, S. (Creator), Miyara, S. (Contributor), Ruzal, M. (Creator), Grabherr, M. (Creator), Rafati, N. (Creator), Molin, A. (Contributor), Pendavis, K. (Creator), Burgess, S. C. (Creator), Andersson, L. (Creator) & Friedman-Einat, M. (Creator), figshare, 2018

  DOI: 10.6084/m9.figshare.6188069.v1, https://springernature.figshare.com/articles/Additional_file_1_of_Comparative_omics_and_feeding_manipulations_in_chicken_indicate_a_shift_of_the_endocrine_role_of_visceral_fat_towards_reproduction/6188069/1

  Dataset