Ecology and Evolutionary Biology

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• Bionano optical maps of Twelve Platinum-Standard Reference Genomes Sequence

  Zhou, Y. (Creator), Chebotarov, D. (Creator), Kudrna, D. (Creator), Llaca, V. (Creator), Lee, S. (Creator), Rajasekar, S. (Creator), Mohammed, N. (Creator), Al-Bader, N. (Creator), Sobel-Sorenson, C. (Creator), Parakkal, P. (Creator), Arbelaez, L. J. (Contributor), Franco, N. (Creator), Alexandrov, N. (Creator), Hamilton, N. R. S. (Creator), Leung, H. (Creator), Mauleon, R. (Creator), Lorieux, M. (Creator), Zuccolo, A. (Creator), McNally, K. (Creator), Zhang, J. (Creator) & Wing, R. A. (Creator), figshare, 2020

  DOI: 10.6084/m9.figshare.11904876.v1, https://springernature.figshare.com/articles/dataset/Bionano_optical_maps_of_Twelve_Platinum-Standard_Reference_Genomes_Sequence/11904876/1

  Dataset

• Data from: Universal and taxon-specific trends in protein sequences as a function of age

  James, J. E. (Creator), Willis, S. M. (Creator), Nelson, P. G. (Creator), Weibel, C. (Creator), Kosinski, L. J. (Creator) & Masel, J. (Creator), figshare, 2020

  DOI: 10.6084/m9.figshare.12037281, https://figshare.com/articles/Data_from_Universal_and_taxon-specific_trends_in_protein_sequences_as_a_function_of_age/12037281

  Dataset

• Metadata record for: A platinum standard pan-genome resource that represents the population structure of Asian rice

  Zhou, Y. (Contributor), Chebotarov, D. (Contributor), Kudrna, D. (Contributor), Llaca, V. (Contributor), Lee, S. (Contributor), Rajasekar, S. (Contributor), Mohammed, N. (Contributor), Al-Bader, N. (Contributor), Sobel-Sorenson, C. (Contributor), Parakkal, P. (Contributor), Arbelaez, L. J. (Contributor), Franco, N. (Contributor), Alexandrov, N. (Contributor), Hamilton, N. R. S. (Contributor), Leung, H. (Contributor), Mauleon, R. (Contributor), Lorieux, M. (Contributor), Zuccolo, A. (Contributor), McNally, K. (Contributor), Zhang, J. (Contributor) & Wing, R. A. (Contributor), figshare, 2020

  DOI: 10.6084/m9.figshare.11950596.v1, https://springernature.figshare.com/articles/Metadata_record_for_A_platinum_standard_pan-genome_resource_that_represents_the_population_structure_of_Asian_rice/11950596/1

  Dataset

• Elongation during segmentation shows axial variability, low mitotic rates, and synchronized cell cycle domains in the crustacean, Thamnocephalus platyurus

  Constantinou, S. J. (Creator), Duan, N. (Creator), Nagy, L. M. (Creator), Chipman, A. D. (Creator) & Williams, T. A. (Creator), figshare, 2020

  DOI: 10.6084/m9.figshare.c.4822818.v1, https://springernature.figshare.com/collections/Elongation_during_segmentation_shows_axial_variability_low_mitotic_rates_and_synchronized_cell_cycle_domains_in_the_crustacean_Thamnocephalus_platyurus/4822818/1

  Dataset

• MOESM10 of Genome sequence of the model rice variety KitaakeX

  Jain, R. (Creator), Jenkins, J. (Creator), Shu, S. (Contributor), Chern, M. (Contributor), Martin, J. A. (Creator), Copetti, D. (Creator), Duong, P. Q. (Creator), Pham, N. T. (Creator), Kudrna, D. A. (Creator), Talag, J. (Creator), Schackwitz, W. S. (Creator), Lipzen, A. M. (Creator), Dilworth, D. (Creator), Bauer, D. (Creator), Grimwood, J. (Creator), Nelson, C. R. (Creator), Xing, F. (Creator), Xie, W. (Contributor), Barry, K. W. (Creator), Wing, R. A. (Creator), Schmutz, J. (Creator), Li, G. (Contributor) & Ronald, P. C. (Creator), figshare, 2019

  DOI: 10.6084/m9.figshare.11293511.v1, https://springernature.figshare.com/articles/MOESM10_of_Genome_sequence_of_the_model_rice_variety_KitaakeX/11293511/1

  Dataset

• Data from: Temporal scale of environmental correlations affects ecological synchrony

  Desharnais, R. A. (Contributor), Reuman, D. C. (Contributor), Costantino, R. F. (Contributor) & Cohen, J. E. (Contributor), ZENODO, Aug 23 2019

  DOI: 10.5061/dryad.8024p3h, https://zenodo.org/records/4976742

  Dataset

• Data from: 1970s and 'Patient 0' HIV-1 genomes illuminate early HIV/AIDS history in North America

  Worobey, M. (Contributor), Watts, T. D. (Contributor), McKay, R. A. (Contributor), Suchard, M. A. (Contributor), Granade, T. (Contributor), Teuwen, D. E. (Contributor), Koblin, B. A. (Contributor), Heneine, W. (Contributor), Lemey, P. (Contributor) & Jaffe, H. W. (Contributor), ZENODO, Aug 31 2017

  DOI: 10.5061/dryad.7mv7v, https://zenodo.org/records/4983103

  Dataset

• Data from: Testing the role of climate in speciation: new methods and applications to squamate reptiles (lizards and snakes)

  Jezkova, T. (Creator) & Wiens, J. J. (Creator), Dryad, Apr 18 2018

  DOI: 10.5061/dryad.78s7g21, https://datadryad.org/stash/dataset/doi:10.5061/dryad.78s7g21

  Dataset

• Supplementary material from "Explaining the ocean's richest biodiversity hotspot and global patterns of fish diversity"

  Miller, E. C. (Creator), Hayashi, K. T. (Creator), Song, D. (Contributor) & Wiens, J. J. (Creator), figshare, 2018

  DOI: 10.6084/m9.figshare.c.4244933.v1, https://figshare.com/collections/Supplementary_material_from_Explaining_the_ocean_s_richest_biodiversity_hotspot_and_global_patterns_of_fish_diversity_/4244933/1

  Dataset

• Data from: Extensive gene tree discordance and hemiplasy shaped the genomes of North American columnar cacti

  Copetti, D. (Contributor), Búrquez, A. (Contributor), Bustamante, E. (Contributor), Charboneau, J. L. M. (Contributor), Childs, K. L. (Contributor), Eguiarte, L. E. (Contributor), Lee, S. (Contributor), Liu, T. L. (Contributor), McMahon, M. M. (Contributor), Whiteman, N. K. (Contributor), Wing, R. A. (Contributor), Wojciechowski, M. F. (Contributor) & Sanderson, M. J. (Contributor), ZENODO, Oct 27 2018

  DOI: 10.5061/dryad.72c2g, https://zenodo.org/records/4971340

  Dataset

• Data from: Out of the dark: 350 million years of conservatism and evolution in diel activity patterns in vertebrates

  Anderson, S. R. (Creator) & Wiens, J. J. (Creator), Dryad, May 24 2017

  DOI: 10.5061/dryad.fg700, https://datadryad.org/stash/dataset/doi:10.5061/dryad.fg700

  Dataset

• Fig. 4 in Towards incorporating insect isotope analysis using cavity ring-down spectroscopy into area-wide insect pest management programs

  Simmons, G. S. (Contributor), Mayr, L. (Contributor), Seth, R. K. (Contributor), Saad, N. M. R. (Contributor), Davidowitz, G. (Contributor) & Hood-Nowotny, R. C. (Contributor), ZENODO, Jun 30 2016

  DOI: 10.5281/zenodo.12814635, https://zenodo.org/records/12814635

  Dataset

• Data from: How and when do insects rely on endogenous protein and lipid resources during lethal bouts of starvation? a new application for 13C-breath testing

  McCue, M. D. (Contributor), Marena, G. R. (Contributor), Passement, C. A. (Contributor) & Davidowitz, G. (Contributor), ZENODO, Sep 28 2016

  DOI: 10.5061/dryad.2r8f9, https://zenodo.org/records/4936076

  Dataset

• Data from: The rice paradox: multiple origins but single domestication in Asian rice

  Choi, J. Y. (Contributor), Platts, A. E. (Contributor), Fuller, D. Q. (Contributor), Hsing, Y.-I. (Contributor), Wing, R. A. (Contributor) & Purugganan, M. D. (Contributor), ZENODO, Jul 26 2018

  DOI: 10.5061/dryad.7cr0q, https://zenodo.org/records/5024198

  Dataset

• Figure S2 from Phylogenomic analyses of more than 4000 nuclear loci resolve the origin of snakes among lizard families

  Streicher, J. W. (Creator) & Wiens, J. J. (Creator), The Royal Society, 2017

  DOI: 10.6084/m9.figshare.5353657.v1, https://rs.figshare.com/articles/figure/Figure_S2_from_Phylogenomic_analyses_of_more_than_4000_nuclear_loci_resolve_the_origin_of_snakes_among_lizard_families/5353657/1

  Dataset

• FIGURE 1 in Inordinate Fondness Multiplied And Redistributed: The Number Of Species On Earth And The New Pie Of Life

  Larsen, B. B. (Contributor), Miller, E. C. (Contributor), Rhodes, M. K. (Contributor) & Wiens, J. J. (Contributor), ZENODO, Dec 31 2017

  DOI: 10.5281/zenodo.851790, https://zenodo.org/records/851790

  Dataset

• Additional file 3: of Chloroplast sequence variation and the efficacy of peptide nucleic acids for blocking host amplification in plant microbiome studies

  Fitzpatrick, C. R. (Creator), Lu-Irving, P. (Creator), Copeland, J. (Creator), Guttman, D. S. (Creator), Wang, P. W. (Creator), Baltrus, D. A. (Creator), Dlugosch, K. M. (Creator) & Johnson, M. T. J. (Creator), figshare, 2018

  DOI: 10.6084/m9.figshare.6983108.v1, https://springernature.figshare.com/articles/Additional_file_3_of_Chloroplast_sequence_variation_and_the_efficacy_of_peptide_nucleic_acids_for_blocking_host_amplification_in_plant_microbiome_studies/6983108/1

  Dataset

• Data from: Why have multiple plastic responses? Interactions between color change and heat avoidance behavior in Battus philenor larvae

  Nielsen, M. E. (Creator) & Papaj, D. R. (Creator), Dryad, Jan 31 2017

  DOI: 10.5061/dryad.ph826, https://datadryad.org/stash/dataset/doi:10.5061/dryad.ph826

  Dataset

• Appendix A. Literature sources for height data.

  Swenson, N. G. (Creator) & Enquist, B. J. (Creator), figshare, 2016

  DOI: 10.6084/m9.figshare.3531629.v1, https://wiley.figshare.com/articles/dataset/Appendix_A_Literature_sources_for_height_data_/3531629/1

  Dataset

• Appendix A. Details of logarithmic binning, cumulative distribution function fitting, and maximum likelihood estimation.

  White, E. P. (Creator), Enquist, B. J. (Creator) & Green, J. L. (Creator), Wiley, 2016

  DOI: 10.6084/m9.figshare.3529124.v1, https://wiley.figshare.com/articles/dataset/Appendix_A_Details_of_logarithmic_binning_cumulative_distribution_function_fitting_and_maximum_likelihood_estimation_/3529124/1

  Dataset

• Appendix B. Conceptual figure describing the calculation of a, b, c1, and c2.

  Hulshof, C. M. (Creator), Stegen, J. C. (Creator), Swenson, N. G. (Creator), Enquist, C. A. F. (Creator) & Enquist, B. J. (Creator), Wiley, 2016

  DOI: 10.6084/m9.figshare.3552456.v1, https://wiley.figshare.com/articles/dataset/Appendix_B_Conceptual_figure_describing_the_calculation_of_a_b_c1_and_c2_/3552456/1

  Dataset

• Data from: Phylogenomic analyses of more than 4000 nuclear loci resolve the origin of snakes among lizard families

  Streicher, J. W. (Creator) & Wiens, J. J. (Creator), Dryad, Aug 22 2017

  DOI: 10.5061/dryad.66gt5, https://datadryad.org/stash/dataset/doi:10.5061/dryad.66gt5

  Dataset

• MOESM7 of Composition and genomic organization of arthropod Hox clusters

  Pace, R. M. (Creator), Grbić, M. (Contributor) & Nagy, L. M. (Creator), figshare, 2016

  DOI: 10.6084/m9.figshare.c.3603458_d2, https://springernature.figshare.com/articles/dataset/MOESM7_of_Composition_and_genomic_organization_of_arthropod_Hox_clusters/4339910

  Dataset

• Appendix B. Statistical methods for estimating cov(E,C).

  Sears, A. L. W. (Creator) & Chesson, P. (Creator), figshare, 2016

  DOI: 10.6084/m9.figshare.3528194, https://wiley.figshare.com/articles/dataset/Appendix_B_Statistical_methods_for_estimating_cov_E_C_/3528194

  Dataset

• Appendix B. Time series of daily gross primary productivity (GPP) and green chromatic coordinate (GCC) for all deciduous broadleaf forest (DBF) evergreen needleleaf forest (ENF) and grassland (GRS) sites, listed by plant functional type.

  Toomey, M. (Creator), Friedl, M. A. (Creator), Frolking, S. (Creator), Hufkens, K. (Creator), Klosterman, S. (Creator), Sonnentag, O. (Creator), Baldocchi, D. D. (Creator), Bernacchi, C. J. (Creator), Biraud, S. C. (Creator), Bohrer, G. (Creator), Brzostek, E. (Creator), Burns, S. P. (Creator), Coursolle, C. (Creator), Hollinger, D. Y. (Creator), Margolis, H. A. (Creator), McCaughey, H. (Creator), Monson, R. K. (Creator), Munger, J. W. (Contributor), Pallardy, S. (Creator), Phillips, R. P. (Creator), Torn, M. S. (Creator), Wharton, S. (Creator), Zeri, M. (Creator) & Richardson, A. D. (Creator), figshare, 2016

  DOI: 10.6084/m9.figshare.3520370, https://wiley.figshare.com/articles/dataset/Appendix_B_Time_series_of_daily_gross_primary_productivity_GPP_and_green_chromatic_coordinate_GCC_for_all_deciduous_broadleaf_forest_DBF_evergreen_needleleaf_forest_ENF_and_grassland_GRS_sites_listed_by_plant_functional_type_/3520370

  Dataset