Biosystems Engineering, Research

Search results

• Current challenges and future of agricultural genomes to phenomes in the USA

  Schnable, P. S. (Creator), Tuggle, C. K. (Creator), Guadagno, C. R. (Creator), das Choudhury, S. (Contributor), Lubberstedt, T. T. (Contributor), Dorea, J. R. R. (Contributor), Lipka, A. E. (Creator), Thornton, K. J. (Creator), Lyons, E. H. (Creator), Daigle, C. L. (Creator), Scott, N. M. (Creator), Fulton, J. E. (Creator), Clarke, J. L. (Creator), Campbell, J. D. (Creator), Chung, H. C. (Creator), Rowan, T. N. (Creator), McCarthy, F. M. (Creator), Van Tassell, C. P. (Creator), Thompson, A. M. (Creator), Murray, S. C. (Creator), Mckay, S. D. (Contributor), Lawrence-Dill, C. J. (Creator), Sheehan, M. J. (Creator), Dekkers, J. C. M. (Creator), Riggs, P. K. (Creator), Murdoch, B. M. (Creator), Steibel, J. P. (Creator), Kramer, L. M. (Creator), Hagen, D. E. (Creator), Benes, B. (Contributor), Ertl, D. S. (Creator), Fragomeni, B. D. O. (Creator) & Hess, A. S. (Creator), figshare, 2024

  DOI: 10.6084/m9.figshare.c.7007210.v1, https://springernature.figshare.com/collections/Current_challenges_and_future_of_agricultural_genomes_to_phenomes_in_the_USA/7007210/1

  Dataset

• Data and Code for evaluation of E. Coli in sediment for assessing irrigation water quality using machine learning

  Tousi, E. G. (Creator), Duan, J. G. (Creator), Gundy, P. M. (Creator), Bright, K. R. (Creator) & Gerba, C. P. (Creator), University of Arizona Research Data Repository, 2022

  DOI: 10.25422/azu.data.21096184, https://arizona.figshare.com/articles/software/Data_and_Code_for_evaluation_of_E_Coli_in_sediment_for_assessing_irrigation_water_quality_using_machine_learning/21096184

  Dataset

• Design and characterization of a combined OCT and wide field imaging falloposcope for ovarian cancer detection

  Keenan, M. (Creator), Tate, T. H. (Creator), Kieu, K. (Creator), Black, J. F. (Creator), Utzinger, U. (Creator) & Barton, J. K. (Creator), figshare, 2017

  DOI: 10.6084/m9.figshare.c.3753449.v1, https://figshare.com/collections/Design_and_characterization_of_a_combined_OCT_and_wide_field_imaging_falloposcope_for_ovarian_cancer_detection/3753449/1

  Dataset

• Datasets for Evaluating Metagenomic Phage Detection Tools

  Schackart III, K. E. (Contributor), Graham, J. B. (Contributor), Ponsero, A. J. (Contributor) & Hurwitz, B. L. (Contributor), ZENODO, Oct 13 2022

  DOI: 10.5281/zenodo.7490015, https://zenodo.org/records/7490015

  Dataset

• Using collections data to infer biogeographic, environmental, and host structure in communities of endophytic fungi

  Huang, Y.-L. (Creator), Bowman, E. A. (Creator), Massimo, N. C. (Creator), Garber, N. P. (Creator), U'Ren, J. M. (Contributor), Sandberg, D. C. (Creator) & Arnold, A. E. (Contributor), figshare, 2018

  DOI: 10.6084/m9.figshare.6886433, https://tandf.figshare.com/articles/Using_collections_data_to_infer_biogeographic_environmental_and_host_structure_in_communities_of_endophytic_fungi/6886433

  Dataset

• The genome of the saltwater crocodile (Crocodylus porosus)

  Green, R. E. (Creator), Braun, E. L. (Creator), Armstrong, J. (Creator), Earl, D. (Creator), Nguyen, N. (Creator), Hickey, G. (Creator), Vandewege, M. W. (Creator), St John, J. A. (Creator), Capella-Gutiérrez, S. (Creator), Castoe, T. A. (Creator), Kern, C. (Creator), Fujita, M. K. (Creator), Opazo, J. C. (Creator), Jurka, J. (Creator), Kojima, K. K. (Creator), Caballero, J. (Creator), Hubley, R. M. (Creator), Smit, A. F. (Creator), Platt, R. N. (Creator), Lavoie, C. A. (Creator), Ramakodi, M. P. (Creator), Suh, A. (Creator), Miles, L. (Creator), Chong, A. Y. (Creator), Jaratlerdsiri, W. (Creator), Gongora, J. (Creator), Moran, C. (Creator), Iriarte, A. (Creator), McCormack, J. (Creator), Burgess, S. C. (Creator), Edwards, S. V. (Creator), Lyons, E. (Creator), Williams, C. (Creator), Breen, M. (Creator), Howard, J. T. (Creator), Gresham, C. R. (Creator), Peterson, D. G. (Creator), Schmitz, J. (Creator), Pollock, D. D. (Creator), Haussler, D. (Creator), Triplett, E. W. (Creator), Zhang, G. (Creator), Irie, N. (Creator), Jarvis, E. D. (Creator), Brochu, C. A. (Creator), Schmidt, C. J. (Creator), McCarthy, F. M. (Creator), Faircloth, B. C. (Creator), Hoffmann, F. G. (Creator), Glenn, T. C. (Creator), Gabaldón, T. (Creator), Paten, B. (Creator) & Ray, D. A. (Creator), GigaScience Database, Oct 21 2014

  DOI: 10.5524/100127, http://gigadb.org/dataset/100127

  Dataset

• Data from: Mie scattering and microparticle based characterization of heavy metal ions and classification by statistical inference methods

  Klug, K. E. (Creator), Jennings, C. M. (Creator), Lytal, N. (Creator), An, L. (Creator) & Yoon, J.-Y. (Creator), Dryad, Apr 10 2019

  DOI: 10.5061/dryad.62n8p0q, https://datadryad.org/dataset/doi:10.5061/dryad.62n8p0q

  Dataset

• CCDC 1049909: Experimental Crystal Structure Determination

  Luo, J.-G. (Creator), Wang, X.-B. (Creator), Xu, Y.-M. (Creator), Uren, J. M. (Contributor), Arnold, A. E. (Creator), Kong, L.-Y. (Creator) & Gunatilaka, A. A. L. (Creator), Cambridge Crystallographic Data Centre, 2015

  DOI: 10.5517/cc147j1y, http://www.ccdc.cam.ac.uk/services/structure_request?id=doi:10.5517/cc147j1y&sid=DataCite

  Dataset

• Phonological measures in bilinguals (Fabiano-Smith et al., 2021)

  Fabiano-Smith, L. (Creator), Privette, C. (Creator) & An, L. (Creator), ASHA journals, 2021

  DOI: 10.23641/asha.16632604, https://asha.figshare.com/articles/figure/Phonological_measures_in_bilinguals_Fabiano-Smith_et_al_2021_/16632604

  Dataset

• The genome of the Indian gharial (Gavialis gangeticus).

  Green, R. E. (Creator), Braun, E. L. (Creator), Armstrong, J. (Creator), Earl, D. (Creator), Nguyen, N. (Creator), Hickey, G. (Creator), Vandewege, M. W. (Creator), St John, J. A. (Creator), Capella-Gutiérrez, S. (Contributor), Castoe, T. A. (Creator), Kern, C. (Creator), Fujita, M. K. (Creator), Opazo, J. C. (Creator), Jurka, J. (Creator), Kojima, K. K. (Creator), Caballero, J. (Creator), Hubley, R. M. (Creator), Smit, A. F. (Creator), Platt, R. N. (Creator), Lavoie, C. A. (Creator), Ramakodi, M. P. (Creator), Suh, A. (Creator), Miles, L. (Creator), Chong, A. Y. (Creator), Jaratlerdsiri, W. (Creator), Gongora, J. (Creator), Moran, C. (Creator), Iriarte, A. (Creator), McCormack, J. (Creator), Burgess, S. C. (Creator), Edwards, S. V. (Creator), Lyons, E. (Creator), Williams, C. (Creator), Breen, M. (Creator), Howard, J. T. (Creator), Gresham, C. R. (Creator), Peterson, D. G. (Creator), Schmitz, J. (Creator), Pollock, D. D. (Creator), Haussler, D. (Creator), Triplett, E. W. (Creator), Zhang, G. (Creator), Irie, N. (Creator), Jarvis, E. D. (Creator), Brochu, C. A. (Creator), Schmidt, C. J. (Creator), McCarthy, F. M. (Creator), Faircloth, B. C. (Creator), Hoffmann, F. G. (Creator), Glenn, T. C. (Creator), Gabaldón, T. (Contributor), Paten, B. (Creator) & Ray, D. A. (Creator), GigaScience Database, Oct 29 2014

  DOI: 10.5524/100128, http://gigadb.org/dataset/100128

  Dataset

• Host availability drives distributions of fungal endophytes in the imperilled boreal realm

  U’Ren, J. M. (Contributor), Lutzoni, F. (Contributor), Miadlikowska, J. (Creator), Zimmerman, N. B. (Creator), Carbone, I. (Creator), May, G. (Creator) & Arnold, A. E. (Contributor), figshare, 2019

  DOI: 10.6084/m9.figshare.c.4327772, https://figshare.com/collections/Host_availability_drives_distributions_of_fungal_endophytes_in_the_imperilled_boreal_realm/4327772

  Dataset

• Supplementary Table 1 from Marine mammal skin microbiotas are influenced by host phylogeny

  Apprill, A. (Creator), Miller, C. A. (Creator), van Cise, A. M. (Contributor), U’Ren, J. M. (Contributor), Leslie, M. S. (Creator), Weber, L. (Creator), Baird, R. W. (Creator), Robbins, J. (Contributor), Landry, S. (Creator), Bogomolni, A. (Creator) & Waring, G. (Creator), The Royal Society, 2020

  DOI: 10.6084/m9.figshare.12279773, https://rs.figshare.com/articles/Supplementary_Table_1_from_Marine_mammal_skin_microbiotas_are_influenced_by_host_phylogeny/12279773

  Dataset

• Data and Code for evaluation of E. Coli in sediment for assessing irrigation water quality using machine learning

  Tousi, E. G. (Creator), Duan, J. G. (Creator), Gundy, P. M. (Creator), Bright, K. R. (Creator) & Gerba, C. P. (Creator), University of Arizona Research Data Repository, 2022

  DOI: 10.25422/azu.data.21096184.v1, https://arizona.figshare.com/articles/software/Data_and_Code_for_evaluation_of_E_Coli_in_sediment_for_assessing_irrigation_water_quality_using_machine_learning/21096184/1

  Dataset

• Data from: The banana (Musa acuminata) genome and the evolution of monocotyledonous plants

  D'hont, A. (Contributor), Denoeud, F. (Contributor), Aury, J.-M. (Contributor), Baurens, F.-C. (Contributor), Carreel, F. (Contributor), Garsmeur, O. (Contributor), Noel, B. (Contributor), Bocs, S. (Contributor), Droc, G. (Contributor), Rouard, M. (Contributor), Da Silva, C. (Contributor), Jabbari, K. (Contributor), Cardi, C. (Contributor), Poulain, J. (Contributor), Souquet, M. (Contributor), Labadie, K. (Contributor), Jourda, C. (Contributor), Lengellé, J. (Contributor), Rodier-Goud, M. (Contributor), Alberti, A. (Contributor), Bernard, M. (Contributor), Correa, M. (Contributor), Ayyampalayam, S. (Contributor), Mckain, M. R. (Contributor), Leebens-Mack, J. (Contributor), Burgess, D. (Contributor), Freeling, M. (Contributor), Mbéguié-A-Mbéguié, D. (Contributor), Chabannes, M. (Contributor), Wicker, T. (Contributor), Panaud, O. (Contributor), Barbosa, J. (Contributor), Hribova, E. (Contributor), Heslop-Harrison, P. (Contributor), Habas, R. (Contributor), Rivallan, R. (Contributor), Francois, P. (Contributor), Poiron, C. (Contributor), Kilian, A. (Contributor), Burthia, D. (Contributor), Jenny, C. (Contributor), Bakry, F. (Contributor), Brown, S. (Contributor), Guignon, V. (Contributor), Kema, G. (Contributor), Dita, M. (Contributor), Waalwijk, C. (Contributor), Joseph, S. (Contributor), Dievart, A. (Contributor), Jaillon, O. (Contributor), Leclercq, J. (Contributor), Argout, X. (Contributor), Lyons, E. (Contributor), Almeida, A. (Contributor), Jeridi, M. (Contributor), Dolezel, J. (Contributor), Roux, N. (Contributor), Risterucci, A.-M. (Contributor), Weissenbach, J. (Contributor), Ruiz, M. (Contributor), Glaszmann, J.-C. (Contributor), Quétier, F. (Contributor), Yahiaoui, N. (Contributor) & Wincker, P. (Contributor), ZENODO, Feb 5 2013

  DOI: 10.5061/dryad.mm54f, https://zenodo.org/records/4995816

  Dataset

• Data from: The banana (Musa acuminata) genome and the evolution of monocotyledonous plants

  D'hont, A. (Contributor), Denoeud, F. (Creator), Aury, J.-M. (Creator), Baurens, F.-C. (Creator), Carreel, F. (Creator), Garsmeur, O. (Creator), Noel, B. (Creator), Bocs, S. (Creator), Droc, G. (Creator), Rouard, M. (Creator), Da Silva, C. (Creator), Jabbari, K. (Contributor), Cardi, C. (Creator), Poulain, J. (Creator), Souquet, M. (Creator), Labadie, K. (Creator), Jourda, C. (Creator), Lengellé, J. (Creator), Rodier-Goud, M. (Creator), Alberti, A. (Creator), Bernard, M. (Creator), Correa, M. (Creator), Ayyampalayam, S. (Creator), Mckain, M. R. (Contributor), Leebens-Mack, J. (Creator), Burgess, D. (Creator), Freeling, M. (Creator), Mbéguié-A-Mbéguié, D. (Contributor), Chabannes, M. (Creator), Wicker, T. (Creator), Panaud, O. (Creator), Barbosa, J. (Creator), Hribova, E. (Creator), Heslop-Harrison, P. (Creator), Habas, R. (Creator), Rivallan, R. (Creator), Francois, P. (Creator), Poiron, C. (Creator), Kilian, A. (Creator), Burthia, D. (Creator), Jenny, C. (Creator), Bakry, F. (Creator), Brown, S. (Creator), Guignon, V. (Creator), Kema, G. (Creator), Dita, M. (Creator), Waalwijk, C. (Creator), Joseph, S. (Creator), Dievart, A. (Creator), Jaillon, O. (Creator), Leclercq, J. (Creator), Argout, X. (Creator), Lyons, E. (Creator), Almeida, A. (Creator), Jeridi, M. (Creator), Dolezel, J. (Creator), Roux, N. (Creator), Risterucci, A.-M. (Creator), Weissenbach, J. (Creator), Ruiz, M. (Creator), Glaszmann, J.-C. (Creator), Quétier, F. (Creator), Yahiaoui, N. (Creator) & Wincker, P. (Creator), Dryad, Feb 5 2013

  DOI: 10.5061/dryad.mm54f, https://datadryad.org/dataset/doi:10.5061/dryad.mm54f

  Dataset

• Additional file 2: of Age-related variation in the oral microbiome of urban Cooperâ s hawks (Accipiter cooperii)

  Taylor, M. J. (Creator), Mannan, R. W. (Contributor), U'Ren, J. M. (Contributor), Garber, N. P. (Creator), Gallery, R. E. (Creator) & Arnold, A. E. (Contributor), figshare, 2019

  DOI: 10.6084/m9.figshare.7755500.v1, https://springernature.figshare.com/articles/Additional_file_2_of_Age-related_variation_in_the_oral_microbiome_of_urban_Cooper_s_hawks_Accipiter_cooperii_/7755500/1

  Dataset

• Additional file 3: of Age-related variation in the oral microbiome of urban Cooperâ s hawks (Accipiter cooperii)

  Taylor, M. J. (Creator), Mannan, R. W. (Contributor), U'Ren, J. M. (Contributor), Garber, N. P. (Creator), Gallery, R. E. (Creator) & Arnold, A. E. (Contributor), figshare, 2019

  DOI: 10.6084/m9.figshare.7755506, https://springernature.figshare.com/articles/Additional_file_3_of_Age-related_variation_in_the_oral_microbiome_of_urban_Cooper_s_hawks_Accipiter_cooperii_/7755506

  Dataset

• Supplementary Materials

  Liang, Y. (Creator), Khanthaphixay, B. (Creator), Reynolds, J. (Creator), Leigh, P. J. (Creator), Lim, M. L. (Creator) & Yoon, J.-Y. (Creator), AIP Publishing, 2024

  DOI: 10.60893/figshare.apr.26217719.v1, https://aip.figshare.com/articles/figure/Supplementary_Materials/26217719/1

  Dataset

• Supplementary material from "Marine mammal skin microbiotas are influenced by host phylogeny"

  Apprill, A. (Creator), Miller, C. A. (Creator), van Cise, A. M. (Contributor), U’Ren, J. M. (Contributor), Leslie, M. S. (Creator), Weber, L. (Creator), Baird, R. W. (Creator), Robbins, J. (Contributor), Landry, S. (Creator), Bogomolni, A. (Creator) & Waring, G. (Creator), The Royal Society, 2020

  DOI: 10.6084/m9.figshare.c.4971206, https://rs.figshare.com/collections/Supplementary_material_from_Marine_mammal_skin_microbiotas_are_influenced_by_host_phylogeny_/4971206

  Dataset

• N-of-1-pathways MixEnrich: advancing precision medicine via single-subject analysis in discovering dynamic changes of transcriptomes

  Li, Q. (Creator), Schissler, A. G. (Creator), Gardeux, V. (Creator), Achour, I. (Creator), Kenost, C. (Creator), Berghout, J. (Creator), Li, H. (Creator), Zhang, H. H. (Creator) & Lussier, Y. A. (Creator), figshare, 2017

  DOI: 10.6084/m9.figshare.c.3787331, https://springernature.figshare.com/collections/N-of-1-pathways_MixEnrich_advancing_precision_medicine_via_single-subject_analysis_in_discovering_dynamic_changes_of_transcriptomes/3787331

  Dataset

• Supplementary Table 1 from Marine mammal skin microbiotas are influenced by host phylogeny

  Apprill, A. (Creator), Miller, C. A. (Creator), van Cise, A. M. (Contributor), U’Ren, J. M. (Contributor), Leslie, M. S. (Creator), Weber, L. (Creator), Baird, R. W. (Creator), Robbins, J. (Contributor), Landry, S. (Creator), Bogomolni, A. (Creator) & Waring, G. (Creator), The Royal Society, 2020

  DOI: 10.6084/m9.figshare.12279773.v1, https://rs.figshare.com/articles/Supplementary_Table_1_from_Marine_mammal_skin_microbiotas_are_influenced_by_host_phylogeny/12279773/1

  Dataset

• Data from: Tissue storage and primer selection influence pyrosequencing-based inferences of diversity and community composition of endolichenic and endophytic fungi

  U'Ren, J. M. (Contributor), Riddle, J. M. (Contributor), Monacell, J. T. (Contributor), Carbone, I. (Contributor), Miadlikowska, J. (Contributor) & Arnold, A. E. (Contributor), ZENODO, Mar 11 2014

  DOI: 10.5061/dryad.8271f, https://zenodo.org/records/5026435

  Dataset

• The genome of the American aligator (Alligator mississippiensis)

  Green, R. E. (Creator), Braun, E. L. (Creator), Armstrong, J. (Creator), Earl, D. (Creator), Nguyen, N. (Creator), Hickey, G. (Creator), Vandewege, M. W. (Creator), St John, J. A. (Creator), Capella-Gutiérrez, S. (Creator), Castoe, T. A. (Creator), Kern, C. (Creator), Fujita, M. K. (Creator), Opazo, J. C. (Creator), Jurka, J. (Creator), Kojima, K. K. (Creator), Caballero, J. (Creator), Hubley, R. M. (Creator), Smit, A. F. (Creator), Platt, R. N. (Creator), Lavoie, C. A. (Creator), Ramakodi, M. P. (Creator), Suh, A. (Creator), Miles, L. (Creator), Chong, A. Y. (Creator), Jaratlerdsiri, W. (Creator), Gongora, J. (Creator), Moran, C. (Creator), Iriarte, A. (Creator), McCormack, J. (Creator), Burgess, S. C. (Creator), Edwards, S. V. (Creator), Lyons, E. (Creator), Williams, C. (Creator), Breen, M. (Creator), Howard, J. T. (Creator), Gresham, C. R. (Creator), Peterson, D. G. (Creator), Schmitz, J. (Creator), Pollock, D. D. (Creator), Haussler, D. (Creator), Triplett, E. W. (Creator), Zhang, G. (Creator), Irie, N. (Creator), Jarvis, E. D. (Creator), Brochu, C. A. (Creator), Schmidt, C. J. (Creator), McCarthy, F. M. (Creator), Faircloth, B. C. (Creator), Hoffmann, F. G. (Creator), Glenn, T. C. (Creator), Gabaldón, T. (Creator), Paten, B. (Creator), Ray, D. A. (Creator), Haussler, D. (Creator), Gabaldón, T. (Creator) & Paten, B. (Creator), GigaScience Database, Oct 21 2014

  DOI: 10.5524/100126, http://gigadb.org/dataset/100126

  Dataset

• Additional file 2: of Novel disease syndromes unveiled by integrative multiscale network analysis of diseases sharing molecular effectors and comorbidities

  Li, H. (Contributor), Fan, J. (Contributor), Vitali, F. (Creator), Berghout, J. (Creator), Aberasturi, D. (Creator), Li, J. (Contributor), Wilson, L. (Creator), Chiu, W. (Creator), Pumarejo, M. (Contributor), Han, J. (Contributor), Kenost, C. (Creator), Koripella, P. C. (Creator), Pouladi, N. (Creator), Billheimer, D. (Creator), Bedrick, E. J. (Creator) & Lussier, Y. A. (Creator), figshare, 2018

  DOI: 10.6084/m9.figshare.7538453, https://springernature.figshare.com/articles/Additional_file_2_of_Novel_disease_syndromes_unveiled_by_integrative_multiscale_network_analysis_of_diseases_sharing_molecular_effectors_and_comorbidities/7538453

  Dataset

• Design and characterization of a combined OCT and wide field imaging falloposcope for ovarian cancer detection

  Keenan, M. (Creator), Tate, T. H. (Creator), Kieu, K. (Creator), Black, J. F. (Creator), Utzinger, U. (Creator) & Barton, J. K. (Creator), figshare, 2017

  DOI: 10.6084/m9.figshare.c.3753449, https://figshare.com/collections/Design_and_characterization_of_a_combined_OCT_and_wide_field_imaging_falloposcope_for_ovarian_cancer_detection/3753449

  Dataset