Biosystems Engineering, Research

Search results

• Using collections data to infer biogeographic, environmental, and host structure in communities of endophytic fungi

  Huang, Y. (Creator), Bowman, E. A. (Creator), Massimo, N. C. (Creator), Garber, N. P. (Creator), Uren, J. M. (Contributor), Sandberg, D. C. (Creator) & Arnold, A. E. (Contributor), Taylor & Francis, 2018

  DOI: 10.6084/m9.figshare.6886433.v1, https://tandf.figshare.com/articles/Using_collections_data_to_infer_biogeographic_environmental_and_host_structure_in_communities_of_endophytic_fungi/6886433/1

  Dataset

• Supporting data for "Libra: scalable k-mer based tool for massive all-vs-all metagenome comparisons."

  Choi, I. (Contributor), Ponsero, A. J. (Contributor), Bomhoff, M. (Contributor), Youens-Clark, K. (Contributor), Hartman, J. H. (Contributor) & Hurwitz, B. L. (Contributor), GigaScience Database, 2018

  DOI: 10.5524/100547, http://gigadb.org/dataset/100547

  Dataset

• Data from: Mie scattering and microparticle based characterization of heavy metal ions and classification by statistical inference methods

  Klug, K. E. (Creator), Jennings, C. M. (Creator), Lytal, N. (Creator), An, L. (Creator) & Yoon, J. (Creator), Dryad, 2019

  DOI: 10.5061/dryad.62n8p0q, http://datadryad.org/stash/dataset/doi:10.5061/dryad.62n8p0q

  Dataset

• Additional file 3: of Age-related variation in the oral microbiome of urban Cooperâ s hawks (Accipiter cooperii)

  Taylor, M. J. (Creator), Mannan, R. W. (Contributor), Uren, J. M. (Contributor), Garber, N. P. (Creator), Gallery, R. E. (Creator) & Arnold, A. E. (Contributor), figshare, 2019

  DOI: 10.6084/m9.figshare.7755506.v1, https://springernature.figshare.com/articles/Additional_file_3_of_Age-related_variation_in_the_oral_microbiome_of_urban_Cooper_s_hawks_Accipiter_cooperii_/7755506/1

  Dataset

• Data from: The banana (Musa acuminata) genome and the evolution of monocotyledonous plants

  D'hont, A. (Contributor), Denoeud, F. (Creator), Aury, J. (Creator), Baurens, F. (Creator), Carreel, F. (Creator), Garsmeur, O. (Creator), Noel, B. (Creator), Bocs, S. (Creator), Droc, G. (Creator), Rouard, M. (Creator), Da Silva, C. (Creator), Jabbari, K. (Contributor), Cardi, C. (Creator), Poulain, J. (Creator), Souquet, M. (Creator), Labadie, K. (Creator), Jourda, C. (Creator), Lengellé, J. (Creator), Rodier-Goud, M. (Creator), Alberti, A. (Creator), Bernard, M. (Creator), Correa, M. (Creator), Ayyampalayam, S. (Creator), Mckain, M. R. (Contributor), Leebens-Mack, J. (Creator), Burgess, D. (Creator), Freeling, M. (Creator), Mbéguié-A-Mbéguié, D. (Contributor), Chabannes, M. (Creator), Wicker, T. (Creator), Panaud, O. (Creator), Barbosa, J. (Creator), Hribova, E. (Creator), Heslop-Harrison, P. (Creator), Habas, R. (Creator), Rivallan, R. (Creator), Francois, P. (Creator), Poiron, C. (Creator), Kilian, A. (Creator), Burthia, D. (Creator), Jenny, C. (Creator), Bakry, F. (Creator), Brown, S. (Creator), Guignon, V. (Creator), Kema, G. (Creator), Dita, M. (Creator), Waalwijk, C. (Creator), Joseph, S. (Creator), Dievart, A. (Creator), Jaillon, O. (Creator), Leclercq, J. (Creator), Argout, X. (Creator), Lyons, E. H. (Creator), Almeida, A. (Creator), Jeridi, M. (Creator), Dolezel, J. (Creator), Roux, N. (Creator), Risterucci, A. (Creator), Weissenbach, J. (Creator), Ruiz, M. (Creator), Glaszmann, J. (Creator), Quétier, F. (Creator), Yahiaoui, N. (Creator) & Wincker, P. (Creator), Dryad, 2013

  DOI: 10.5061/dryad.mm54f, http://datadryad.org/stash/dataset/doi:10.5061/dryad.mm54f

  Dataset

• Data from: Mie scattering and microparticle based characterization of heavy metal ions and classification by statistical inference methods

  Klug, K. E. (Contributor), Jennings, C. M. (Contributor), Lytal, N. (Contributor), An, L. (Contributor) & Yoon, J. (Contributor), ZENODO, 2019

  DOI: 10.5061/dryad.62n8p0q, https://zenodo.org/record/4957023

  Dataset

• Supplementary material from "Marine mammal skin microbiotas are influenced by host phylogeny"

  Apprill, A. (Creator), Miller, C. A. (Creator), van Cise, A. M. (Contributor), Uren, J. M. (Contributor), Leslie, M. S. (Creator), Weber, L. (Creator), Baird, R. W. (Creator), Robbins, J. (Contributor), Landry, S. (Creator), Bogomolni, A. (Creator) & Waring, G. (Creator), The Royal Society, 2020

  DOI: 10.6084/m9.figshare.c.4971206.v1, https://rs.figshare.com/collections/Supplementary_material_from_Marine_mammal_skin_microbiotas_are_influenced_by_host_phylogeny_/4971206/1

  Dataset

• Data from: The banana (Musa acuminata) genome and the evolution of monocotyledonous plants

  D'hont, A. (Contributor), Denoeud, F. (Contributor), Aury, J. (Contributor), Baurens, F. (Contributor), Carreel, F. (Contributor), Garsmeur, O. (Contributor), Noel, B. (Contributor), Bocs, S. (Contributor), Droc, G. (Contributor), Rouard, M. (Contributor), Da Silva, C. (Contributor), Jabbari, K. (Contributor), Cardi, C. (Contributor), Poulain, J. (Contributor), Souquet, M. (Contributor), Labadie, K. (Contributor), Jourda, C. (Contributor), Lengellé, J. (Contributor), Rodier-Goud, M. (Contributor), Alberti, A. (Contributor), Bernard, M. (Contributor), Correa, M. (Contributor), Ayyampalayam, S. (Contributor), Mckain, M. R. (Contributor), Leebens-Mack, J. (Contributor), Burgess, D. (Contributor), Freeling, M. (Contributor), Mbéguié-A-Mbéguié, D. (Contributor), Chabannes, M. (Contributor), Wicker, T. (Contributor), Panaud, O. (Contributor), Barbosa, J. (Contributor), Hribova, E. (Contributor), Heslop-Harrison, P. (Contributor), Habas, R. (Contributor), Rivallan, R. (Contributor), Francois, P. (Contributor), Poiron, C. (Contributor), Kilian, A. (Contributor), Burthia, D. (Contributor), Jenny, C. (Contributor), Bakry, F. (Contributor), Brown, S. (Contributor), Guignon, V. (Contributor), Kema, G. (Contributor), Dita, M. (Contributor), Waalwijk, C. (Contributor), Joseph, S. (Contributor), Dievart, A. (Contributor), Jaillon, O. (Contributor), Leclercq, J. (Contributor), Argout, X. (Contributor), Lyons, E. H. (Contributor), Almeida, A. (Contributor), Jeridi, M. (Contributor), Dolezel, J. (Contributor), Roux, N. (Contributor), Risterucci, A. (Contributor), Weissenbach, J. (Contributor), Ruiz, M. (Contributor), Glaszmann, J. (Contributor), Quétier, F. (Contributor), Yahiaoui, N. (Contributor) & Wincker, P. (Contributor), ZENODO, 2013

  DOI: 10.5061/dryad.mm54f, https://zenodo.org/record/4995816

  Dataset

• Additional file 1: of Novel disease syndromes unveiled by integrative multiscale network analysis of diseases sharing molecular effectors and comorbidities

  Li, H. (Contributor), Fan, J. (Contributor), Vitali, F. (Creator), Berghout, J. (Creator), Aberasturi, D. (Creator), Li, J. (Contributor), Wilson, L. (Creator), Chiu, W. (Creator), Pumarejo, M. (Contributor), Han, J. (Contributor), Kenost, C. (Creator), Koripella, P. C. (Creator), Pouladi, N. (Creator), Billheimer, D. D. (Creator), Bedrick, E. J. (Creator) & Lussier, Y. A. (Creator), figshare, 2018

  DOI: 10.6084/m9.figshare.7538441.v1, https://springernature.figshare.com/articles/Additional_file_1_of_Novel_disease_syndromes_unveiled_by_integrative_multiscale_network_analysis_of_diseases_sharing_molecular_effectors_and_comorbidities/7538441/1

  Dataset

• Phonological measures in bilinguals (Fabiano-Smith et al., 2021)

  Fabiano-Smith, L. C. (Creator), Privette, C. (Creator) & An, L. (Creator), ASHA journals, 2021

  DOI: 10.23641/asha.16632604.v1, https://asha.figshare.com/articles/figure/Phonological_measures_in_bilinguals_Fabiano-Smith_et_al_2021_/16632604/1

  Dataset

• Additional file 3 of Novel disease syndromes unveiled by integrative multiscale network analysis of diseases sharing molecular effectors and comorbidities

  Li, H. (Contributor), Fan, J. (Contributor), Vitali, F. (Creator), Berghout, J. (Creator), Aberasturi, D. (Creator), Li, J. (Contributor), Wilson, L. (Creator), Chiu, W. (Creator), Pumarejo, M. (Contributor), Han, J. (Contributor), Kenost, C. (Creator), Koripella, P. C. (Creator), Pouladi, N. (Creator), Billheimer, D. D. (Creator), Bedrick, E. J. (Creator) & Lussier, Y. A. (Creator), figshare, 2018

  DOI: 10.6084/m9.figshare.7538459.v1, https://springernature.figshare.com/articles/Additional_file_3_of_Novel_disease_syndromes_unveiled_by_integrative_multiscale_network_analysis_of_diseases_sharing_molecular_effectors_and_comorbidities/7538459/1

  Dataset

• Supplementary Table 1 from Marine mammal skin microbiotas are influenced by host phylogeny

  Apprill, A. (Creator), Miller, C. A. (Creator), van Cise, A. M. (Contributor), Uren, J. M. (Contributor), Leslie, M. S. (Creator), Weber, L. (Creator), Baird, R. W. (Creator), Robbins, J. (Contributor), Landry, S. (Creator), Bogomolni, A. (Creator) & Waring, G. (Creator), The Royal Society, 2020

  DOI: 10.6084/m9.figshare.12279773.v2, https://rs.figshare.com/articles/Supplementary_Table_1_from_Marine_mammal_skin_microbiotas_are_influenced_by_host_phylogeny/12279773/2

  Dataset

• Supplementary Table 1 from Marine mammal skin microbiotas are influenced by host phylogeny

  Apprill, A. (Creator), Miller, C. A. (Creator), van Cise, A. M. (Contributor), Uren, J. M. (Contributor), Leslie, M. S. (Creator), Weber, L. (Creator), Baird, R. W. (Creator), Robbins, J. (Contributor), Landry, S. (Creator), Bogomolni, A. (Creator) & Waring, G. (Creator), The Royal Society, 2020

  DOI: 10.6084/m9.figshare.12279773.v1, https://rs.figshare.com/articles/Supplementary_Table_1_from_Marine_mammal_skin_microbiotas_are_influenced_by_host_phylogeny/12279773/1

  Dataset

• Data from: Tissue storage and primer selection influence pyrosequencing-based inferences of diversity and community composition of endolichenic and endophytic fungi

  Uren, J. M. (Contributor), Riddle, J. M. (Contributor), Monacell, J. T. (Contributor), Carbone, I. (Contributor), Miadlikowska, J. (Contributor) & Arnold, A. E. (Contributor), ZENODO, 2014

  DOI: 10.5061/dryad.8271f, https://zenodo.org/record/5026435

  Dataset

• Annotation and analysis of three crocodilian genomes

  Green, R. E. (Creator), Braun, E. L. (Creator), Armstrong, J. (Creator), Earl, D. (Creator), Nguyen, N. (Creator), Hickey, G. (Creator), Vandewege, M. W. (Creator), St John, J. A. (Creator), Capella-Gutiérrez, S. (Creator), Castoe, T. A. (Creator), Kern, C. (Creator), Fujita, M. K. (Creator), Opazo, J. C. (Creator), Jurka, J. (Creator), Kojima, K. K. (Creator), Caballero, J. (Creator), Hubley, R. M. (Creator), Smit, A. F. (Creator), Platt, R. N. (Creator), Lavoie, C. A. (Creator), Ramakodi, M. P. (Creator), Suh, A. (Creator), Miles, L. (Creator), Chong, A. Y. (Creator), Jaratlerdsiri, W. (Creator), Gongora, J. (Creator), Moran, C. (Creator), Iriarte, A. (Creator), McCormack, J. (Creator), Burgess, S. C. (Creator), Edwards, S. V. (Creator), Lyons, E. H. (Creator), Williams, C. (Creator), Breen, M. (Creator), Howard, J. T. (Creator), Gresham, C. R. (Creator), Peterson, D. G. (Creator), Schmitz, J. (Creator), Pollock, D. D. (Creator), Haussler, D. (Creator), Triplett, E. W. (Creator), Zhang, G. (Creator), Irie, N. (Creator), Jarvis, E. D. (Creator), Brochu, C. A. (Creator), Schmidt, C. J. (Creator), McCarthy, F. M. (Creator), Faircloth, B. C. (Creator), Hoffmann, F. G. (Creator), Glenn, T. C. (Creator), Gabaldón, T. (Creator), Paten, B. (Creator) & Ray, D. A. (Creator), GigaScience Database, 2014

  DOI: 10.5524/100125, http://gigadb.org/dataset/100125

  Dataset

• Supporting data for "iMicrobe: Tools and data-driven discovery platform for the microbiome sciences"

  Youens-Clark, K. (Contributor), Bomhoff, M. (Contributor), Ponsero, A. J. (Contributor), Wood-Charlson, E. M. (Contributor), Lynch, J. (Contributor), Choi, I. (Contributor), Hartman, J. H. (Contributor) & Hurwitz, B. L. (Contributor), GigaScience Database, 2019

  DOI: 10.5524/100611, http://gigadb.org/dataset/100611

  Dataset

• Additional file 2: of Age-related variation in the oral microbiome of urban Cooperâ s hawks (Accipiter cooperii)

  Taylor, M. J. (Creator), Mannan, R. W. (Contributor), Uren, J. M. (Contributor), Garber, N. P. (Creator), Gallery, R. E. (Creator) & Arnold, A. E. (Contributor), figshare, 2019

  DOI: 10.6084/m9.figshare.7755500.v1, https://springernature.figshare.com/articles/Additional_file_2_of_Age-related_variation_in_the_oral_microbiome_of_urban_Cooper_s_hawks_Accipiter_cooperii_/7755500/1

  Dataset

• N-of-1-pathways MixEnrich: advancing precision medicine via single-subject analysis in discovering dynamic changes of transcriptomes

  Li, Q. (Contributor), Schissler, A. G. (Contributor), Gardeux, V. (Creator), Achour, I. (Contributor), Kenost, C. (Creator), Berghout, J. (Creator), Li, H. (Contributor), Zhang, H. (Creator) & Lussier, Y. A. (Creator), figshare, 2017

  DOI: 10.6084/m9.figshare.c.3787331.v1, https://figshare.com/collections/N-of-1-pathways_MixEnrich_advancing_precision_medicine_via_single-subject_analysis_in_discovering_dynamic_changes_of_transcriptomes/3787331/1

  Dataset

• Data from: Tissue storage and primer selection influence pyrosequencing-based inferences of diversity and community composition of endolichenic and endophytic fungi

  Uren, J. M. (Creator), Riddle, J. M. (Creator), Monacell, J. T. (Creator), Carbone, I. (Creator), Miadlikowska, J. (Creator) & Arnold, A. E. (Creator), Dryad, 2014

  DOI: 10.5061/dryad.8271f, http://datadryad.org/stash/dataset/doi:10.5061/dryad.8271f

  Dataset

• Data from: Phylogenomic analysis of BAC-end sequence libraries in Oryza (Poaceae)

  Cranston, K. A. (Creator), Hurwitz, B. L. (Creator), Sanderson, M. J. (Creator), Ware, D. (Creator), Wing, R. A. (Creator) & Stein, L. (Creator), Dryad, 2010

  DOI: 10.5061/dryad.1611, http://datadryad.org/stash/dataset/doi:10.5061/dryad.1611

  Dataset

• CCDC 1049909: Experimental Crystal Structure Determination

  Luo, J. (Creator), Wang, X. (Creator), Xu, Y. (Creator), Uren, J. M. (Contributor), Arnold, A. E. (Creator), Kong, L. (Creator) & Gunatilaka, L. (Creator), Cambridge Crystallographic Data Centre, 2015

  DOI: 10.5517/cc147j1y, http://www.ccdc.cam.ac.uk/services/structure_request?id=doi:10.5517/cc147j1y&sid=DataCite

  Dataset

• Data from: Phylogenomic analysis of BAC-end sequence libraries in Oryza (Poaceae)

  Cranston, K. A. (Contributor), Hurwitz, B. L. (Contributor), Sanderson, M. J. (Contributor), Ware, D. (Contributor), Wing, R. A. (Contributor) & Stein, L. (Contributor), ZENODO, 2010

  DOI: 10.5061/dryad.1611, https://zenodo.org/record/4944524

  Dataset

• Data and Code for evaluation of E. Coli in sediment for assessing irrigation water quality using machine learning

  Tousi, E. G. (Creator), Duan, J. G. (Creator), Gundy, P. M. (Creator), Bright, K. R. (Creator) & Gerba, C. P. (Creator), University of Arizona Research Data Repository, 2022

  DOI: 10.25422/azu.data.21096184.v1, https://arizona.figshare.com/articles/software/Data_and_Code_for_evaluation_of_E_Coli_in_sediment_for_assessing_irrigation_water_quality_using_machine_learning/21096184/1

  Dataset

• Age-related variation in the oral microbiome of urban Cooper’s hawks (Accipiter cooperii)

  Taylor, M. J. (Creator), Mannan, R. W. (Contributor), Uren, J. M. (Contributor), Garber, N. P. (Creator), Gallery, R. E. (Creator) & Arnold, A. E. (Contributor), figshare, 2019

  DOI: 10.6084/m9.figshare.c.4410926.v1, https://springernature.figshare.com/collections/Age-related_variation_in_the_oral_microbiome_of_urban_Cooper_s_hawks_Accipiter_cooperii_/4410926/1

  Dataset

• Supplementary material from "Marine mammal skin microbiotas are influenced by host phylogeny"

  Apprill, A. (Creator), Miller, C. A. (Creator), van Cise, A. M. (Contributor), Uren, J. M. (Contributor), Leslie, M. S. (Creator), Weber, L. (Creator), Baird, R. W. (Creator), Robbins, J. (Contributor), Landry, S. (Creator), Bogomolni, A. (Creator) & Waring, G. (Creator), The Royal Society, 2020

  DOI: 10.6084/m9.figshare.c.4971206.v2, https://rs.figshare.com/collections/Supplementary_material_from_Marine_mammal_skin_microbiotas_are_influenced_by_host_phylogeny_/4971206/2

  Dataset