BIO5, Institute of

Search results

• Dataset: Machine learning-assisted identification and quantification of hydroxylated metabolites of polychlorinated biphenyls in animal samples

  Zhang, C. (Creator), Li, X. (Creator), Keil Stietz, K. P. (Contributor), Sethi, S. (Creator), Yang, W. (Creator), Marek, R. F. (Creator), Ding, X. (Creator), Lein, P. J. (Creator), Hornbuckle, K. C. (Creator), Lehmler, H. (Creator), Ding, X. (Creator), Lehmler, H. (Creator) & Stietz, K. P. K. (Creator), University of Iowa, 2022

  DOI: 10.25820/data.006179, https://iro.uiowa.edu/esploro/outputs/dataset/9984265745002771

  Dataset

• 3N7B : SgrAI bound to secondary site DNA and Ca(II)

  Little, E. J. (Contributor), Dunten, P. W. (Contributor) & Horton, N. C. (Contributor), RCSB-PDB, 2010

  DOI: 10.2210/pdb3n7b/pdb, https://www.rcsb.org/structure/3N7B

  Dataset

• 3N78 : SgrAI bound to Secondary Site DNA and Mg(II)

  Little, E. J. (Contributor), Dunten, P. W. (Contributor) & Horton, N. C. (Contributor), RCSB-PDB, 2010

  DOI: 10.2210/pdb3n78/pdb, https://www.rcsb.org/structure/3N78

  Dataset

• 3E40 : Q138F HincII bound to GTTAAC and cocrystallized with 5 mM Ca2+

  Babic, A. C. (Contributor), Little, E. J. (Contributor), Manohar, V. M. (Contributor) & Horton, N. C. (Contributor), RCSB-PDB, 2008

  DOI: 10.2210/pdb3e40/pdb, https://www.rcsb.org/structure/3E40

  Dataset

• 3E45 : Q138F HincII bound to Noncognate DNA (GTGCAC) and Ca2+

  Babic, A. C. (Contributor), Little, E. J. (Contributor), Manohar, V. M. (Contributor) & Horton, N. C. (Contributor), RCSB-PDB, 2008

  DOI: 10.2210/pdb3e45/pdb, https://www.rcsb.org/structure/3E45

  Dataset

• Protease activated receptor 2 (PAR2) activation causes migraine-like pain behaviors in mice

  Hassler, S. N. (Creator), Ahmad, F. B. (Creator), Burgos-Vega, C. C. (Creator), Boitano, S. A. (Creator), Vagner, J. (Creator), Price, T. J. (Creator), Dussor, G. (Creator) & Price, T. J. (Creator), figshare, 2018

  DOI: 10.25384/sage.c.4119893.v1, https://figshare.com/collections/Protease_activated_receptor_2_PAR2_activation_causes_migraine-like_pain_behaviors_in_mice/4119893/1

  Dataset

• Low-Toxin <i>Clostridioides difficile</i> RT027 Strains Exhibit Robust Virulence

  Anwar, F. (Creator), Roxas, B. A. P. (Creator), Shehab, K. W. (Creator), Ampel, N. M. (Creator), Viswanathan, V. K. (Creator) & Vedantam, G. (Creator), Taylor & Francis, 2022

  DOI: 10.6084/m9.figshare.20375314, https://tandf.figshare.com/articles/online_resource/Low-Toxin_i_Clostridioides_difficile_i_RT027_Strains_Exhibit_Robust_Virulence/20375314

  Dataset

• Multiple environmental stressors induce an adaptive maternal effect

  Potticary, A. (Contributor) & Duckworth, R. A. (Contributor), ZENODO, Oct 21 2020

  DOI: 10.5061/dryad.z08kprr99, https://zenodo.org/record/4116982

  Dataset

• Additional file 3 of TDP-43 proteinopathy alters the ribosome association of multiple mRNAs including the glypican Dally-like protein (Dlp)/GPC6

  Lehmkuhl, E. M. (Creator), Loganathan, S. (Contributor), Alsop, E. (Creator), Blythe, A. D. (Creator), Kovalik, T. (Creator), Mortimore, N. P. (Creator), Barrameda, D. (Creator), Kueth, C. (Contributor), Eck, R. J. (Creator), Siddegowda, B. B. (Creator), Joardar, A. (Contributor), Ball, H. (Creator), Macias, M. E. (Creator), Bowser, R. (Creator), Van Keuren-Jensen, K. (Contributor) & Zarnescu, D. C. (Creator), figshare, 2021

  DOI: 10.6084/m9.figshare.14299509, https://springernature.figshare.com/articles/dataset/Additional_file_3_of_TDP-43_proteinopathy_alters_the_ribosome_association_of_multiple_mRNAs_including_the_glypican_Dally-like_protein_Dlp_GPC6/14299509

  Dataset

• TDP-43 proteinopathy alters the ribosome association of multiple mRNAs including the glypican Dally-like protein (Dlp)/GPC6

  Lehmkuhl, E. M. (Creator), Loganathan, S. (Contributor), Alsop, E. (Creator), Blythe, A. D. (Creator), Kovalik, T. (Creator), Mortimore, N. P. (Creator), Barrameda, D. (Creator), Kueth, C. (Contributor), Eck, R. J. (Creator), Siddegowda, B. B. (Creator), Joardar, A. (Contributor), Ball, H. (Creator), Macias, M. E. (Creator), Bowser, R. (Creator), Van Keuren-Jensen, K. (Contributor), Zarnescu, D. C. (Creator) & Keuren-Jensen, K. V. (Creator), figshare, 2021

  DOI: 10.6084/m9.figshare.c.5352381.v1, https://springernature.figshare.com/collections/TDP-43_proteinopathy_alters_the_ribosome_association_of_multiple_mRNAs_including_the_glypican_Dally-like_protein_Dlp_GPC6/5352381/1

  Dataset

• 3DVO : SgrAI with cognate DNA and calcium bound

  Little, E. J. (Contributor), Dunten, P. W. (Contributor) & Horton, N. C. (Contributor), RCSB-PDB, 2008

  DOI: 10.2210/pdb3dvo/pdb, https://www.rcsb.org/structure/3DVO

  Dataset

• 3DW9 : SgrAI with cognate DNA and manganese bound

  Dunten, P. W. (Contributor), Little, E. J. (Contributor) & Horton, N. C. (Contributor), RCSB-PDB, 2008

  DOI: 10.2210/pdb3dw9/pdb, https://www.rcsb.org/structure/3DW9

  Dataset

• 1STX : Structure of the K38A mutant of EcoRV bound to cognate DNA and Mn2+

  Horton, N. C. (Contributor) & Perona, J. J. (Contributor), RCSB-PDB, 2004

  DOI: 10.2210/pdb1stx/pdb, https://www.rcsb.org/structure/1STX

  Dataset

• 2GIG : Alteration of sequence specificity of the type II restriction endonuclease HINCII through an indirect readout mechanism

  Joshi, H. K. (Contributor), Etzkorn, C. (Contributor), Chatwell, L. (Contributor), Bitinaite, J. (Contributor) & Horton, N. C. (Contributor), RCSB-PDB, 2006

  DOI: 10.2210/pdb2gig/pdb, https://www.rcsb.org/structure/2GIG

  Dataset

• 1KC6 : HincII Bound to Cognate DNA

  Horton, N. C. (Contributor), Dorner, L. F. (Contributor) & Perona, J. J. (Contributor), RCSB-PDB, 2001

  DOI: 10.2210/pdb1kc6/pdb, https://www.rcsb.org/structure/1KC6

  Dataset

• Data from: Scrutinizing assortative mating in birds

  Wang, D. (Creator), Forstmeier, W. (Creator), Valcu, M. (Creator), Dingemanse, N. J. (Creator), Bulla, M. (Creator), Both, C. (Creator), Duckworth, R. A. (Creator), Kiere, L. M. (Creator), Karell, P. (Creator), Albrecht, T. (Creator) & Kempenaers, B. (Creator), Dryad, Feb 8 2020

  DOI: 10.5061/dryad.7jd76kq, https://datadryad.org/stash/dataset/doi:10.5061/dryad.7jd76kq

  Dataset

• CCDC 1904050: Experimental Crystal Structure Determination

  Shi, T. (Contributor), Zerio, C. (Contributor), Sivinski, J. (Contributor), Ambrose, A. J. (Contributor), Moore, K. T. (Contributor), Buckley, T. (Contributor), Kaneko, L. (Contributor), Zhang, M. (Contributor), Zhang, D. D. (Contributor) & Chapman, E. (Contributor), Cambridge Crystallographic Data Centre, 2019

  DOI: 10.5517/ccdc.csd.cc21x9z8, http://www.ccdc.cam.ac.uk/services/structure_request?id=doi:10.5517/ccdc.csd.cc21x9z8&sid=DataCite

  Dataset

• Data from: 1970s and 'Patient 0' HIV-1 genomes illuminate early HIV/AIDS history in North America

  Worobey, M. (Contributor), Watts, T. D. (Contributor), McKay, R. A. (Contributor), Suchard, M. A. (Contributor), Granade, T. (Contributor), Teuwen, D. E. (Contributor), Koblin, B. A. (Contributor), Heneine, W. (Contributor), Lemey, P. (Contributor), Jaffe, H. W. (Contributor) & Suchard, M. A. (Contributor), ZENODO, Aug 31 2017

  DOI: 10.5061/dryad.7mv7v, https://zenodo.org/record/4983103

  Dataset

• Additional file 6 of Extensive evaluation of ATAC-seq protocols for native or formaldehyde-fixed nuclei

  Zhang, H. (Creator), Rice, M. E. (Creator), Alvin, J. W. (Creator), Farrera-Gaffney, D. (Creator), Galligan, J. J. (Creator), Johnson, M. D. L. (Creator) & Cusanovich, D. A. (Creator), figshare, 2022

  DOI: 10.6084/m9.figshare.19373301, https://springernature.figshare.com/articles/dataset/Additional_file_6_of_Extensive_evaluation_of_ATAC-seq_protocols_for_native_or_formaldehyde-fixed_nuclei/19373301

  Dataset

• Non-SUMOylated CRMP2 decreases NaV1.7 currents via the endocytic proteins Numb, Nedd4-2 and Eps15

  Gomez, K. (Creator), Ran, D. (Contributor), Madura, C. L. (Creator), Moutal, A. (Creator) & Khanna, R. (Creator), figshare, 2021

  DOI: 10.6084/m9.figshare.c.5278129, https://springernature.figshare.com/collections/Non-SUMOylated_CRMP2_decreases_NaV1_7_currents_via_the_endocytic_proteins_Numb_Nedd4-2_and_Eps15/5278129

  Dataset

• Foraging behavior and extended phenotype independently affect foraging success in spiders

  DiRienzo, N. (Contributor), Schraft, H. (Contributor), Montiglio, P. (Contributor), Bradley, C. (Contributor) & Dornhaus, A. R. (Contributor), ZENODO, Aug 18 2020

  DOI: 10.5061/dryad.w3r2280np, https://zenodo.org/record/3997581

  Dataset

• CCDC 1451353: Experimental Crystal Structure Determination

  Chogii, I. (Creator), Das, P. (Creator), Delost, M. D. (Creator), Crawford, M. N. (Creator) & Njardarson, J. T. (Creator), Cambridge Crystallographic Data Centre, 2018

  DOI: 10.5517/ccdc.csd.cc1kq7vc, http://www.ccdc.cam.ac.uk/services/structure_request?id=doi:10.5517/ccdc.csd.cc1kq7vc&sid=DataCite

  Dataset

• Insights into land plant evolution garnered from the Marchantia polymorpha genome, supplementary material

  Bowman, J. L. (Creator), Kohchi, T. (Contributor), Yamato, K. T. (Contributor), Jenkins, J. (Contributor), Shu, S. (Contributor), Ishizaki, K. (Contributor), Yamaoka, S. (Contributor), Nishihama, R. (Contributor), Nakamura, Y. (Contributor), Adam, C. (Contributor), Aki, S. S. (Contributor), Althoff, F. (Contributor), Araki, T. (Contributor), Arteaga-Vazquez, M. A. (Contributor), Balasubrmanian, S. (Contributor), Barry, K. (Contributor), Bauer, D. (Contributor), Boehm, C. R. (Contributor), Briginshaw, L. (Contributor), Catarino, B. (Contributor), Chen, F. (Contributor), Chiyoda, S. (Contributor), Chovatia, M. (Contributor), Davies, K. M. (Contributor), Delmans, M. (Contributor), Demura, T. (Contributor), Dierschke, T. (Contributor), Dolan, L. (Contributor), Dorantes-Acosta, A. E. (Contributor), Eklund, D. M. (Contributor), Florent, S. N. (Contributor), Flores-Sandoval, E. (Contributor), Fujiyama, A. (Contributor), Fukuzawa, H. (Contributor), Galik, B. (Contributor), Grimanelli, D. (Contributor), Grimwood, J. (Contributor), Grossniklaus, U. (Contributor), Hamada, T. (Contributor), Haseloff, J. (Contributor), Hetherington, A. J. (Contributor), Higo, A. (Contributor), Hirakawa, Y. (Contributor), Hundley, H. N. (Contributor), Ikeda, Y. (Contributor), Inoue, K. (Contributor), Inoue, S. (Contributor), Ishida, S. (Contributor), Jia, Q. (Contributor), Kakita, M. (Contributor), Kanazawa, T. (Contributor), Kawai, Y. (Contributor), Kennedy, M. (Contributor), Kinose, K. (Contributor), Kinoshita, T. (Contributor), Kohara, Y. (Contributor), Koide, E. (Contributor), Komatsu, K. (Contributor), Kubo, M. (Contributor), Kyozuka, J. (Contributor), Lagercrantz, U. (Contributor), Lin, S. (Contributor), Lindquist, E. (Contributor), Lipzen, A. M. (Contributor), Martienssen, R. A. (Contributor), Minamino, N. (Contributor), Mizutani, M. (Contributor), Mizutani, M. (Contributor), Mochizuki, N. (Contributor), Monte, I. (Contributor), Harris, R. A. M. (Contributor), Nagasaki, H. (Contributor), Nakagami, H. (Contributor), Naramoto, S. (Contributor), Nishitani, K. (Contributor), Ohtani, M. (Contributor), Okamoto, T. (Contributor), Okumura, M. (Contributor), Phillips, J. (Contributor), Pollak, B. (Contributor), Reinders, A. (Contributor), Rövekamp, M. (Contributor), Sano, R. (Contributor), Sawa, S. (Contributor), Shirakawa, M. (Contributor), Solano, R. (Contributor), Spunde, A. (Contributor), Suetsugu, N. (Contributor), Sugano, S. (Contributor), Sugiyama, A. (Contributor), Sun, R. (Contributor), Suzuki, Y. (Contributor), Takenaka, M. (Contributor), Takezawa, D. (Contributor), Tomogane, H. (Contributor), Tsuzuki, M. (Contributor), Ueda, T. (Contributor), Umeda, M. (Contributor), Ward, J. M. (Contributor), Watanabe, Y. (Contributor), Yazaki, K. (Contributor), Yokoyama, R. (Contributor), Yoshitake, Y. (Contributor), Yotsui, I. (Contributor), Zachgo, S. (Contributor) & Schmutz, J. (Contributor), Mendeley Data, 2017

  DOI: 10.17632/zb7hwyj3hp.1, https://data.mendeley.com/datasets/zb7hwyj3hp

  Dataset

• Independent modulation of individual genomic component transcription and a cis-acting element related to high transcriptional activity in a multipartite DNA virus

  Yu, N. (Contributor), Xie, H. (Creator), Zhang, Y. (Creator), Wang, J. (Creator), Xiong, Z. (Contributor) & Liu, Z. (Creator), figshare, 2019

  DOI: 10.6084/m9.figshare.c.4574015, https://springernature.figshare.com/collections/Independent_modulation_of_individual_genomic_component_transcription_and_a_cis-acting_element_related_to_high_transcriptional_activity_in_a_multipartite_DNA_virus/4574015

  Dataset

• Islet Harvest in Carbon Monoxide-Saturated Medium for Chronic Pancreatitis Patients Undergoing Islet Autotransplantation

  Wang, H. (Contributor), Gou, W. (Contributor), Strange, C. (Creator), Wang, J. (Contributor), Nietert, P. J. (Creator), Cloud, C. (Creator), Owzarski, S. (Creator), Shuford, B. (Creator), Duke, T. (Creator), Luttrell, L. (Creator), Lesher, A. (Creator), Papas, K. K. (Creator), Herold, K. C. (Creator), Clark, P. (Creator), Usmani-Brown, S. (Creator), Kitzmann, J. (Creator), Crosson, C. (Creator), Adams, D. B. (Creator), Morgan, K. A. (Creator), Hongjun, W. (Contributor) & Herold, K. C. (Creator), SAGE Journals, 2019

  DOI: 10.25384/sage.c.4801947.v1, https://sage.figshare.com/collections/Islet_Harvest_in_Carbon_Monoxide-Saturated_Medium_for_Chronic_Pancreatitis_Patients_Undergoing_Islet_Autotransplantation/4801947/1

  Dataset