Applied BioSciences - GIDP

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• 4JPP : Bacteriophage phiX174 H protein residues 143-282

  Fane, B. A. (Contributor), Sun, L. (Contributor), Young, L. N. (Contributor), Zhang, X. (Contributor), Boudko, S. P. (Contributor), Fokine, A. (Contributor) & Rossmann, M. G. (Contributor), RCSB-PDB, 2013

  DOI: 10.2210/pdb4jpp/pdb, https://www.rcsb.org/structure/4JPP

  Dataset

• 4JPN : Bacteriophage phiX174 H protein residues 143-221

  Sun, L. (Contributor), Young, L. N. (Contributor), Zhang, X. (Contributor), Boudko, S. P. (Contributor), Fokine, A. (Contributor), Rossmann, M. G. (Contributor) & Fane, B. A. (Contributor), RCSB-PDB, 2013

  DOI: 10.2210/pdb4jpn/pdb, https://www.rcsb.org/structure/4JPN

  Dataset

• Additional file 8 of Cooperation of immune regulators Tollip and surfactant protein A inhibits influenza A virus infection in mice

  Kraft, M. (Creator), Ledford, J. G. (Creator), Cervantes, D. (Creator), Schaunaman, N. (Creator), Nichols, T. (Creator), Numata, M. (Creator) & Chu, H. (Creator), figshare, 2024

  DOI: 10.6084/m9.figshare.26715838, https://springernature.figshare.com/articles/dataset/Additional_file_8_of_Cooperation_of_immune_regulators_Tollip_and_surfactant_protein_A_inhibits_influenza_A_virus_infection_in_mice/26715838

  Dataset

• Additional file 6 of Extensive evaluation of ATAC-seq protocols for native or formaldehyde-fixed nuclei

  Zhang, H. (Creator), Rice, M. E. (Creator), Alvin, J. W. (Creator), Farrera-Gaffney, D. (Creator), Galligan, J. J. (Creator), Johnson, M. D. L. (Creator) & Cusanovich, D. A. (Creator), figshare, 2022

  DOI: 10.6084/m9.figshare.19373301, https://springernature.figshare.com/articles/dataset/Additional_file_6_of_Extensive_evaluation_of_ATAC-seq_protocols_for_native_or_formaldehyde-fixed_nuclei/19373301

  Dataset

• Appendix C. Methods for DNA extraction, PCR, sequencing, and sequence assembly.

  Arnold, A. E. (Contributor) & Lutzoni, F. (Contributor), figshare, 2016

  DOI: 10.6084/m9.figshare.3527351, https://wiley.figshare.com/articles/dataset/Appendix_C_Methods_for_DNA_extraction_PCR_sequencing_and_sequence_assembly_/3527351

  Dataset

• Appendix E. Statistical tables for regression analyses regarding effects of latitude and annual rainfall on endophyte incidence and diversity.

  Arnold, A. E. (Contributor) & Lutzoni, F. (Contributor), figshare, 2016

  DOI: 10.6084/m9.figshare.3527345, https://wiley.figshare.com/articles/dataset/Appendix_E_Statistical_tables_for_regression_analyses_regarding_effects_of_latitude_and_annual_rainfall_on_endophyte_incidence_and_diversity_/3527345

  Dataset

• Appendix C. Methods for DNA extraction, PCR, sequencing, and sequence assembly.

  Arnold, A. E. (Contributor) & Lutzoni, F. (Contributor), Wiley, 2016

  DOI: 10.6084/m9.figshare.3527351.v1, https://wiley.figshare.com/articles/dataset/Appendix_C_Methods_for_DNA_extraction_PCR_sequencing_and_sequence_assembly_/3527351/1

  Dataset

• Additional file 3: of Characterization and functional biology of the soybean aleurone layer

  Schmidt, M. A. (Creator) & Herman, E. M. (Creator), figshare, 2018

  DOI: 10.6084/m9.figshare.7465814.v1, https://springernature.figshare.com/articles/Additional_file_3_of_Characterization_and_functional_biology_of_the_soybean_aleurone_layer/7465814/1

  Dataset

• Appendix G. Instability in BLAST-based identifications at the genus and family levels for foliar endophytes from two focal tropical hosts (Heisteria concinna, Ouratea lucens).

  Arnold, A. E. (Contributor) & Lutzoni, F. (Contributor), Wiley, 2016

  DOI: 10.6084/m9.figshare.3527339.v1, https://wiley.figshare.com/articles/dataset/Appendix_G_Instability_in_BLAST-based_identifications_at_the_genus_and_family_levels_for_foliar_endophytes_from_two_focal_tropical_hosts_Heisteria_concinna_Ouratea_lucens_/3527339/1

  Dataset

• Data for "Predicting drivers of collective soil function with woody plant encroachment in complex landscapes"

  Farella, M. M. (Creator), Breshears, D. D. (Creator) & Gallery, R. E. (Creator), University of Arizona Research Data Repository, 2020

  DOI: 10.25422/azu.data.12273191, https://arizona.figshare.com/articles/dataset/Data_for_Predicting_drivers_of_collective_soil_function_with_woody_plant_encroachment_in_complex_landscapes_/12273191

  Dataset

• Data for EMSL Project 60045 from October 2023

  Cliff, J. B. (Creator), Kew, W. R. (Creator), Chu, R. K. (Creator), Krechmer, J. E. (Creator), Tolić, N. (Contributor), Hess, N. J. (Creator), Bowden, M. E. (Creator), Shorter, J. H. (Creator), Pauli, W. J. (Creator), Clendinen, C. S. (Creator), Hoyt, D. W. (Creator), Ahkami, A. H. (Creator), Balasubramanian, V. K. (Creator), Wietsma, T. W. (Creator), M Tfaily, M. M. (Contributor), Toyoda, J. G. (Creator), Roscioli, J. R. (Creator), Beliaev, A. S. (Creator), Olson, H. C. (Creator), Arnold, A. E. (Creator), Veličković, M. (Contributor), Bougoure, J. J. (Creator), Veličković, D. V. (Contributor), Meredith, L. K. (Creator) & Gorman, B. L. (Creator), Environmental Molecular Sciences Laboratory, 2023

  DOI: 10.2911808/2459207, https://www.osti.gov/servlets/purl/2459207/

  Dataset

• Extensive evaluation of ATAC-seq protocols for native or formaldehyde-fixed nuclei

  Zhang, H. (Creator), Rice, M. E. (Creator), Alvin, J. W. (Creator), Farrera-Gaffney, D. (Creator), Galligan, J. J. (Creator), Johnson, M. D. L. (Creator) & Cusanovich, D. A. (Creator), figshare, 2022

  DOI: 10.6084/m9.figshare.c.5900442, https://springernature.figshare.com/collections/Extensive_evaluation_of_ATAC-seq_protocols_for_native_or_formaldehyde-fixed_nuclei/5900442

  Dataset

• Additional file 2: of Age-related variation in the oral microbiome of urban Cooperâ s hawks (Accipiter cooperii)

  Taylor, M. J. (Creator), Mannan, R. W. (Contributor), U'Ren, J. M. (Contributor), Garber, N. P. (Creator), Gallery, R. E. (Creator) & Arnold, A. E. (Contributor), figshare, 2019

  DOI: 10.6084/m9.figshare.7755500, https://springernature.figshare.com/articles/Additional_file_2_of_Age-related_variation_in_the_oral_microbiome_of_urban_Cooper_s_hawks_Accipiter_cooperii_/7755500

  Dataset

• 1M0F : Structural Studies of Bacteriophage alpha3 Assembly, Cryo-electron microscopy

  Bernal, R. A. (Contributor), Hafenstein, S. (Contributor), Olson, N. H. (Contributor), Bowman, V. D. (Contributor), Chipman, P. R. (Contributor), Baker, T. S. (Contributor), Fane, B. A. (Contributor) & Rossmann, M. G. (Contributor), RCSB-PDB, 2002

  DOI: 10.2210/pdb1m0f/pdb, https://www.rcsb.org/structure/1M0F

  Dataset

• Age-related variation in the oral microbiome of urban Cooper’s hawks (Accipiter cooperii)

  Taylor, M. J. (Creator), Mannan, R. W. (Contributor), U'Ren, J. M. (Contributor), Garber, N. P. (Creator), Gallery, R. E. (Creator) & Arnold, A. E. (Contributor), figshare, 2019

  DOI: 10.6084/m9.figshare.c.4410926.v1, https://springernature.figshare.com/collections/Age-related_variation_in_the_oral_microbiome_of_urban_Cooper_s_hawks_Accipiter_cooperii_/4410926/1

  Dataset

• Additional file 3: of Age-related variation in the oral microbiome of urban Cooperâ s hawks (Accipiter cooperii)

  Taylor, M. J. (Creator), Mannan, R. W. (Contributor), U'Ren, J. M. (Contributor), Garber, N. P. (Creator), Gallery, R. E. (Creator) & Arnold, A. E. (Contributor), figshare, 2019

  DOI: 10.6084/m9.figshare.7755506.v1, https://springernature.figshare.com/articles/Additional_file_3_of_Age-related_variation_in_the_oral_microbiome_of_urban_Cooper_s_hawks_Accipiter_cooperii_/7755506/1

  Dataset

• Lateral root growth in Arabidopsis is controlled by short and long distance signaling through the LRR RLKs XIP1/CEPR1 and CEPR2

  Dimitrov, I. (Contributor) & Tax, F. E. (Contributor), figshare, 2018

  DOI: 10.6084/m9.figshare.6804518, https://tandf.figshare.com/articles/Lateral_root_growth_in_Arabidopsis_is_controlled_by_short_and_long_distance_signaling_through_the_LRR_RLKs_XIP1_CEPR1_and_CEPR2/6804518

  Dataset

• Bacteriophage phiX174 H protein residues 143-221

  Sun, L. (Contributor), Young, L. N. (Contributor), Zhang, X. (Contributor), Boudko, S. P. (Contributor), Fokine, A. (Contributor), Zbornik, E. (Contributor), Roznowski, A. P. (Contributor), Molineux, I. J. (Contributor), Rossmann, M. G. (Contributor) & Fane, B. A. (Contributor), Protein Data Bank (PDB), Dec 11 2013

  DOI: 10.2210/pdb4JPN/pdb, https://www.wwpdb.org/pdb?id=pdb_00004jpn

  Dataset

• Supplementary Material for: Tollip Inhibits ST2 Signaling in Airway Epithelial Cells Exposed to Type 2 Cytokines and Rhinovirus

  Dakhama, A. (Creator), Pavelka, N. (Creator), Voelker, D. (Creator), Seibold, M. (Creator), Ledford, J. G. (Creator), Kraft, M. (Creator), Li, L. (Creator) & Chu, H. W. (Creator), Karger Publishers, 2019

  DOI: 10.6084/m9.figshare.7916381.v1, https://karger.figshare.com/articles/Supplementary_Material_for_Tollip_Inhibits_ST2_Signaling_in_Airway_Epithelial_Cells_Exposed_to_Type_2_Cytokines_and_Rhinovirus/7916381/1

  Dataset

• Additional file 1 of AtPIG-S, a predicted Glycosylphosphatidylinositol Transamidase subunit, is critical for pollen tube growth in Arabidopsis

  Desnoyer, N. (Creator), Howard, G. (Creator), Jong, E. (Creator) & Palanivelu, R. (Creator), figshare, 2020

  DOI: 10.6084/m9.figshare.12825329.v1, https://springernature.figshare.com/articles/Additional_file_1_of_AtPIG-S_a_predicted_Glycosylphosphatidylinositol_Transamidase_subunit_is_critical_for_pollen_tube_growth_in_Arabidopsis/12825329/1

  Dataset

• Appendix C. A table showing top BLAST matches (in GenBank) for ITS genotypes of fungi isolated from seeds of four Cecropia species following incubation for five months in the forest understory beneath four crowns of C. insignis.

  Gallery, R. E. (Creator), Dalling, J. W. (Creator) & Arnold, A. E. (Contributor), Wiley, 2016

  DOI: 10.6084/m9.figshare.3527393.v1, https://wiley.figshare.com/articles/dataset/Appendix_C_A_table_showing_top_BLAST_matches_in_GenBank_for_ITS_genotypes_of_fungi_isolated_from_seeds_of_four_Cecropia_species_following_incubation_for_five_months_in_the_forest_understory_beneath_four_crowns_of_C_insignis_/3527393/1

  Dataset

• Data from: Assessing models of speciation under different biogeographic scenarios; an empirical study using multi-locus and RNA-seq analyses

  Edwards, T. (Contributor), Tollis, M. (Contributor), Hsieh, P. (Contributor), Gutenkunst, R. N. (Contributor), Liu, Z. (Contributor), Kusumi, K. (Contributor), Culver, M. (Contributor) & Murphy, R. W. (Contributor), ZENODO, Nov 4 2016

  DOI: 10.5061/dryad.g0m5s, https://zenodo.org/records/4933925

  Dataset

• Appendix A. A mixed-model ANOVA table showing fixed effects of seed species and burial location (crown) on seed survival and an ANOVA table showing effects of provenance, burial location, and maternal source on seed survival.

  Gallery, R. E. (Creator), Dalling, J. W. (Creator) & Arnold, A. E. (Contributor), Wiley, 2016

  DOI: 10.6084/m9.figshare.3527399.v1, https://wiley.figshare.com/articles/dataset/Appendix_A_A_mixed-model_ANOVA_table_showing_fixed_effects_of_seed_species_and_burial_location_crown_on_seed_survival_and_an_ANOVA_table_showing_effects_of_provenance_burial_location_and_maternal_source_on_seed_survival_/3527399/1

  Dataset

• Additional file 4 of txci-ATAC-seq: a massive-scale single-cell technique to profile chromatin accessibility

  Mulqueen, R. M. (Creator), Galligan, J. J. (Creator), Farrera, D. O. (Creator), Ledford, J. G. (Creator), Cusanovich, D. A. (Creator), Iannuzo, N. (Creator) & Zhang, H. (Creator), figshare, 2024

  DOI: 10.6084/m9.figshare.26696676.v1, https://springernature.figshare.com/articles/dataset/Additional_file_4_of_txci-ATAC-seq_a_massive-scale_single-cell_technique_to_profile_chromatin_accessibility/26696676/1

  Dataset

• Data for EMSL Project 60045 from September 2023

  Gorman, B. L. (Creator), Bougoure, J. J. (Creator), Roscioli, J. R. (Creator), Arnold, A. E. (Creator) & Meredith, L. K. (Creator), Environmental Molecular Sciences Laboratory, 2023

  DOI: 10.25582/data.2023-09.2888496/2462063, https://www.osti.gov/servlets/purl/2462063/

  Dataset