Gene Expression between two cell layers in maize shoot apical meristem

Doreen Ware (Contributor)
Fusheng Wei (Contributor)
Shiran Pasternak (Contributor)
Chengzhi Liang (Contributor)
Jianwei Zhang (Contributor)
L. Fulton (Contributor)
Pat Minx (Contributor)
Laura Courtney (Contributor)
Chad Tomlinson (Contributor)
Cindy Strong (Contributor)
Kim Delehaunty (Contributor)
Catrina Fronick (Contributor)
Bill Courtney (Contributor)
Eddie Belter (Contributor)
Feiyu Du (Contributor)
Kyung Kim (Contributor)
Marc Cotton (Contributor)
Andy Levy (Contributor)
Pamela Marchetto (Contributor)
Kerri Ochoa (Contributor)
Barbara Gillam (Contributor)
Weizu Chen (Contributor)
Le Yan (Contributor)
Jamey Higginbotham (Contributor)
Marco Cardenas (Contributor)
Jason Waligorski (Contributor)
Elizabeth Applebaum (Contributor)
Lindsey Phelps (Contributor)
Jason Falcone (Contributor)
Krishna Kanchi (Contributor)
Thynn Thane (Contributor)
Adam Scimone (Contributor)
Nay Thane (Contributor)
Jessica Henke (Contributor)
Tom Wang (Contributor)
Jessica Ruppert (Contributor)
Neha Shah (Contributor)
Kelsi Rotter (Contributor)
Jennifer Hodges (Contributor)
Elizabeth Ingenthron (Contributor)
Matt Cordes (Contributor)
Sara Kohlberg (Contributor)
Jennifer Sgro (Contributor)
Brandon Delgado (Contributor)
Kelly Mead (Contributor)
Asif Chinwalla (Contributor)
Shawn Leonard (Contributor)
Kevin Crouse (Contributor)
Kristi Collura (Contributor)
Dave Kudrna (Contributor)
Jennifer Currie (Contributor)
Ruifeng He (Contributor)
Angelina Angelova (Contributor)
Shanmugam Rajasekar (Contributor)
Teri Mueller (Contributor)
Rene Lomeli (Contributor)
Gabriel Scara (Contributor)
Ara Ko (Contributor)
Krista Delaney (Contributor)
Marina Wissotski (Contributor)
Georgina Lopez (Contributor)
David Campos (Contributor)
Michele Braidotti (Contributor)
Elizabeth Ashley (Contributor)
Wolfgang Golser (Contributor)
Hye Ran Kim (Contributor)
Seunghee Lee (Contributor)
Jinke Lin (Contributor)
Zeljko Dujmic (Contributor)
Woojin Kim (Contributor)
Jayson Talag (Contributor)
Andrea Zuccolo (Contributor)
Chuanzhu Fan (Contributor)
Aswathy Sebastian (Contributor)
Melissa Kramer (Contributor)
Lori Spiegel (Contributor)
Lidia Nascimento (Contributor)
Theresa Zutavern (Contributor)
Beth Miller (Contributor)
Claude Ambroise (Contributor)
Stephanie Muller (Contributor)
William Spooner (Contributor)
Apurva Narechania (Contributor)
Liya Ren (Contributor)
Sharon Wei (Contributor)
Sunita Kumari (Contributor)
Ben Faga (Contributor)
Linda McMahan (Contributor)
Peter Van Buren (Contributor)
Kai Ying (Contributor)
Yi Jia (Contributor)
Ananth Kalyanaraman (Contributor)
Cristian Chaparro (Contributor)
Yan Fu (Contributor)
Yujun Han (Contributor)
Hye Ran Lee (Contributor)
Pinghua Li (Contributor)
Sanzhen Liu (Contributor)
Zhijie Liu (Contributor)
Phillip Sanmiguel (Contributor)
Dan Nettleton (Contributor)
John Nguyen (Contributor)
Lalit Ponnala (Contributor)
Anupma Sharma (Contributor)
Cari Soderlund (Contributor)
Qi Sun (Contributor)
Hao Wang (Contributor)
Michael Waterman (Contributor)
Richard Westerman (Contributor)
Lixing Yang (Contributor)
Yeisoo Yu (Contributor)
Lifang Zhang (Contributor)
Shiguo Zhou (Contributor)
Qihui Zhu (Contributor)
Jiming Jiang (Contributor)
Ning Jiang (Contributor)
Srinivas Aluru (Contributor)

Dataset

Description

All above ground organs of higher plants are ultimately derived from shoot apical meristems (SAMs). The SAM exhibits distinctive structural organization, and monocot SAMs such as maize are comprised of two cell layers, a single cell layered tunica (L1) and a corpus (L2). Although recent research has revealed roles of these cell layers in the SAM, intra- and inter-cell-layer signaling networks involved in organ development remain largely unknown except for a few differentially expressed genes. Here, we used Illumnia technology to conduct RNA-seq of L1 and L2 cell layers in maize B73 maize shoot apical meristem. Single sequencing library was constructed for L1 and L2 cell layer. Each library was sequenced using 2 lanes on a Solexa flow cell. Processed data file 'ZmB73_4a.53_filtered_genes.fasta' and its README file are linked below as supplementary files. The fasta file contains the gene model ID and corresponding sequence generated from maize genome project. This fasta file was used for the following samples: GSM418173, GSM418174, GSM420173, GSM420174, GSM422828, GSM422829.

Date made available	2013
Publisher	ArrayExpress

Access Dataset

https://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-16868

Cite this

Ware, D. (Contributor), Wei, F. (Contributor), Pasternak, S. (Contributor), Liang, C. (Contributor), Zhang, J. (Contributor), Fulton, L. (Contributor), Minx, P. (Contributor), Courtney, L. (Contributor), Tomlinson, C. (Contributor), Strong, C. (Contributor), Delehaunty, K. (Contributor), Fronick, C. (Contributor), Courtney, B. (Contributor), Belter, E. (Contributor), Du, F. (Contributor), Kim, K. (Contributor), Cotton, M. (Contributor), Levy, A. (Contributor), Marchetto, P. (Contributor), Ochoa, K. (Contributor), Gillam, B. (Contributor), Chen, W. (Contributor), Yan, L. (Contributor), Higginbotham, J. (Contributor), Cardenas, M. (Contributor), Waligorski, J. (Contributor), Applebaum, E. (Contributor), Phelps, L. (Contributor), Falcone, J. (Contributor), Kanchi, K. (Contributor), Thane, T. (Contributor), Scimone, A. (Contributor), Thane, N. (Contributor), Henke, J. (Contributor), Wang, T. (Contributor), Ruppert, J. (Contributor), Shah, N. (Contributor), Rotter, K. (Contributor), Hodges, J. (Contributor), Ingenthron, E. (Contributor), Cordes, M. (Contributor), Kohlberg, S. (Contributor), Sgro, J. (Contributor), Delgado, B. (Contributor), Mead, K. (Contributor), Chinwalla, A. (Contributor), Leonard, S. (Contributor), Crouse, K. (Contributor), Collura, K. (Contributor), Kudrna, D. (Contributor), Currie, J. (Contributor), He, R. (Contributor), Angelova, A. (Contributor), Rajasekar, S. (Contributor), Mueller, T. (Contributor), Lomeli, R. (Contributor), Scara, G. (Contributor), Ko, A. (Contributor), Delaney, K. (Contributor), Wissotski, M. (Contributor), Lopez, G. (Contributor), Campos, D. (Contributor), Braidotti, M. (Contributor), Ashley, E. (Contributor), Golser, W. (Contributor), Kim, H. (Contributor), Lee, S. (Contributor), Lin, J. (Contributor), Dujmic, Z. (Contributor), Kim, W. (Contributor), Talag, J. (Contributor), Zuccolo, A. (Contributor), Fan, C. (Contributor), Sebastian, A. (Contributor), Kramer, M. (Contributor), Spiegel, L. (Contributor), Nascimento, L. (Contributor), Zutavern, T. (Contributor), Miller, B. (Contributor), Ambroise, C. (Contributor), Muller, S. (Contributor), Spooner, W. (Contributor), Narechania, A. (Contributor), Ren, L. (Contributor), Wei, S. (Contributor), Kumari, S. (Contributor), Faga, B. (Contributor), McMahan, L. (Contributor), Van Buren, P. (Contributor), Ying, K. (Contributor), Jia, Y. (Contributor), Kalyanaraman, A. (Contributor), Chaparro, C. (Contributor), Fu, Y. (Contributor), Han, Y. (Contributor), Lee, H. (Contributor), Li, P. (Contributor), Liu, S. (Contributor), Liu, Z. (Contributor), Sanmiguel, P. (Contributor), Nettleton, D. (Contributor), Nguyen, J. (Contributor), Ponnala, L. (Contributor), Sharma, A. (Contributor), Soderlund, C. (Contributor), Sun, Q. (Contributor), Wang, H. (Contributor), Waterman, M. (Contributor), Westerman, R. (Contributor), Yang, L. (Contributor), Yu, Y. (Contributor), Zhang, L. (Contributor), Zhou, S. (Contributor), Zhu, Q. (Contributor), Jiang, J. (Contributor), Jiang, N. (Contributor), Aluru, S. (Contributor) (2013). Gene Expression between two cell layers in maize shoot apical meristem. ArrayExpress.