Additional file 8: of Comparative genomics of Steinernema reveals deeply conserved gene regulatory networks

  • Adler R. Dillman (Contributor)
  • Marissa Macchietto (Creator)
  • Camille F. Porter (Creator)
  • Alicia Rogers (Creator)
  • Brian Williams (Creator)
  • Igor Antoshechkin (Creator)
  • Ming Min Lee (Contributor)
  • Zane Goodwin (Creator)
  • Xiaojun Lu (Contributor)
  • Edwin E. Lewis (Creator)
  • Heidi Goodrich-Blair (Creator)
  • S.Patricia Stock (Contributor)
  • Byron J. Adams (Creator)
  • P. Sternberg (Creator)
  • Ali Mortazavi (Creator)
  • Paul Sternberg (Creator)
  • Ali Mortazavi (Creator)

Dataset

Description

MEME motif position weight matrices derived from the final 30 conserved stage-specific gene sets. These motifs were derived from conserved non-coding regions Âą3Â kb of S. carpocapsae orthologs that have conserved stage-specific expression profiles during development between S. carpocapsae and S. feltiae. The motif IDs in the file are numbered from 1 to 30. In parentheses next to each motif number is the developmental stage-specific gene set the motif was derived from (e, f, ef, fi, fa, efi, efa, fia, efia) and its old MEME ID. (TXT 17Â kb)
Date made available2015
Publisherfigshare
  • Comparative genomics of Steinernema reveals deeply conserved gene regulatory networks

    Dillman, A. R., Macchietto, M., Porter, C. F., Rogers, A., Williams, B., Antoshechkin, I., Lee, M. M., Goodwin, Z., Lu, X., Lewis, E. E., Goodrich-Blair, H., Stock, S. P., Adams, B. J., Sternberg, P. W. & Mortazavi, A., Sep 21 2015, In: Genome biology. 16, 1, 200.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    67 Scopus citations

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