Additional file 7: of Comparative genomics of Steinernema reveals deeply conserved gene regulatory networks

  • Adler R. Dillman (Contributor)
  • Marissa Macchietto (Creator)
  • Camille F. Porter (Creator)
  • Alicia Rogers (Creator)
  • Brian Williams (Creator)
  • Igor Antoshechkin (Creator)
  • Ming Min Lee (Contributor)
  • Zane Goodwin (Creator)
  • Xiaojun Lu (Contributor)
  • Edwin E. Lewis (Creator)
  • Heidi Goodrich-Blair (Creator)
  • S.Patricia Stock (Contributor)
  • Byron J. Adams (Creator)
  • P. Sternberg (Creator)
  • Ali Mortazavi (Creator)
  • Paul Sternberg (Creator)
  • Ali Mortazavi (Creator)

Dataset

Description

Additional Cufflinks gene and isoform annotations for S. carpocapsae . The file was generated by combining Cufflink’s transcript annotations for four developmental stages (embryo, L1, IJ, and adult) with the Augustus-predicted gene annotations (.gtf format). Gene and isoform IDs beginning with “CUFF” were predicted by Cufflinks, whereas ones beginning with “L596_” were predicted by Augustus. The Augustus annotations here match the WormBase gene annotations for S. carpocapsae. (GTF 55690 kb)
Date made available2015
Publisherfigshare

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