Additional file 7: of Comparative genomics of Steinernema reveals deeply conserved gene regulatory networks

  • Adler R. Dillman (Contributor)
  • Marissa Macchietto (Creator)
  • Camille F. Porter (Creator)
  • Alicia Rogers (Creator)
  • Brian Williams (Creator)
  • Igor Antoshechkin (Creator)
  • Ming Min Lee (Contributor)
  • Zane Goodwin (Creator)
  • Xiaojun Lu (Contributor)
  • Edwin E. Lewis (Creator)
  • Heidi Goodrich-Blair (Creator)
  • S.Patricia Stock (Contributor)
  • Byron J. Adams (Creator)
  • P. Sternberg (Creator)
  • Ali Mortazavi (Creator)
  • Paul Sternberg (Creator)
  • Ali Mortazavi (Creator)

Dataset

Description

Additional Cufflinks gene and isoform annotations for S. carpocapsae . The file was generated by combining Cufflink’s transcript annotations for four developmental stages (embryo, L1, IJ, and adult) with the Augustus-predicted gene annotations (.gtf format). Gene and isoform IDs beginning with “CUFF” were predicted by Cufflinks, whereas ones beginning with “L596_” were predicted by Augustus. The Augustus annotations here match the WormBase gene annotations for S. carpocapsae. (GTF 55690 kb)
Date made available2015
Publisherfigshare
  • Comparative genomics of Steinernema reveals deeply conserved gene regulatory networks

    Dillman, A. R., Macchietto, M., Porter, C. F., Rogers, A., Williams, B., Antoshechkin, I., Lee, M. M., Goodwin, Z., Lu, X., Lewis, E. E., Goodrich-Blair, H., Stock, S. P., Adams, B. J., Sternberg, P. W. & Mortazavi, A., Sep 21 2015, In: Genome biology. 16, 1, 200.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    67 Scopus citations

Cite this