Additional file 6: of Comparative genomics of Steinernema reveals deeply conserved gene regulatory networks

  • Adler R. Dillman (Contributor)
  • Marissa Macchietto (Creator)
  • Camille F. Porter (Creator)
  • Alicia Rogers (Creator)
  • Brian Williams (Creator)
  • Igor Antoshechkin (Creator)
  • Ming Min Lee (Contributor)
  • Zane Goodwin (Creator)
  • Xiaojun Lu (Contributor)
  • Edwin E. Lewis (Creator)
  • Heidi Goodrich-Blair (Creator)
  • S.Patricia Stock (Contributor)
  • Byron J. Adams (Creator)
  • P. Sternberg (Creator)
  • Ali Mortazavi (Creator)

Dataset

Description

S. carpocapsae and S. feltiae orthologs with conserved expression (cosine similarity > 0.95). Lists 1,438â S. carpocapsae orthologs that have conserved expression with S. feltiae during nematode development. The file includes the gene ID of S. carpocapsae (column 1), the ortholog expression similarity (cosine similarity, column 2), the expression values (in TPM) of the S. carpocapsae and S. feltiae orthologs during the time course in replicates (columns 3â 18), and the stage(s) that the ortholog expression is conserved in (column 19). (TXT 171Â kb)
Date made available2015
Publisherfigshare

Access Dataset

  • Comparative genomics of Steinernema reveals deeply conserved gene regulatory networks

    Dillman, A. R., Macchietto, M., Porter, C. F., Rogers, A., Williams, B., Antoshechkin, I., Lee, M. M., Goodwin, Z., Lu, X., Lewis, E. E., Goodrich-Blair, H., Stock, S. P., Adams, B. J., Sternberg, P. W. & Mortazavi, A., Sep 21 2015, In: Genome biology. 16, 1, 200.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    72 Scopus citations

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