Additional file 4: of Comparative genomics of Steinernema reveals deeply conserved gene regulatory networks

  • Adler R. Dillman (Contributor)
  • Marissa Macchietto (Creator)
  • Camille F. Porter (Creator)
  • Alicia Rogers (Creator)
  • Brian Williams (Creator)
  • Igor Antoshechkin (Creator)
  • Ming Min Lee (Contributor)
  • Zane Goodwin (Creator)
  • Xiaojun Lu (Contributor)
  • Edwin E. Lewis (Creator)
  • Heidi Goodrich-Blair (Creator)
  • S.Patricia Stock (Contributor)
  • Byron J. Adams (Creator)
  • P. Sternberg (Creator)
  • Ali Mortazavi (Creator)

Dataset

Description

Genes differentially expressed during S. carpocapsae development. Lists 4,557 DE genes (differential gene expression cutoff: FDR < 10−5 and fold change > 4×) from the eight DE gene expression clusters, and their gene expression levels (FPKM) during S. carpocapsae development (Fig. 3a). The far right column indicates which cluster each gene belongs to. Cluster A genes – genes with high expression in the L1, IJ, and adult stage. Cluster B genes - genes with high expression in the L1 and medium/low expression in the IJ stage. Cluster C genes – genes with high expression in the L1 and IJ stage. Cluster D genes – genes with high expression in the IJ stage. Cluster E genes - genes with high expression in the adult stage and medium/low expression in the L1 stage. Cluster F genes - genes with high expression in the L1 and adult stage. Cluster G genes - genes with high expression in the embryo stage. Cluster H genes – genes with high expression in the L1 stage. (TXT 166 kb)
Date made available2015
Publisherfigshare

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  • Comparative genomics of Steinernema reveals deeply conserved gene regulatory networks

    Dillman, A. R., Macchietto, M., Porter, C. F., Rogers, A., Williams, B., Antoshechkin, I., Lee, M. M., Goodwin, Z., Lu, X., Lewis, E. E., Goodrich-Blair, H., Stock, S. P., Adams, B. J., Sternberg, P. W. & Mortazavi, A., Sep 21 2015, In: Genome biology. 16, 1, 200.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    72 Scopus citations

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